View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13614_low_5 (Length: 566)
Name: NF13614_low_5
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13614_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 46613718 - 46613902
Alignment:
| Q |
11 |
cacagaggaagaaaatttggcagcataagaaagtggagtgagatttaataaccagcggatggagaacgaaacagtaccgaggcaggagagagagaaaacc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46613718 |
cacaaaggaagaaaatttggcagcataagaaagtggagtgaaatttactaaccagcggatggagaaccaaacagtaccgaggcaggagagagagaaaacc |
46613817 |
T |
|
| Q |
111 |
agttttnnnnnnnnnnnnnnnttaattgactaattaataagatttgg-aaaattcataaaatggtgcattaataacctcttatcct |
195 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
46613818 |
agtttt-aaagaaaagaaaaatcaattgactaattaataagatttggaaaaattgataaaatgatgcattaataaccccttatcct |
46613902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 50157387 - 50157570
Alignment:
| Q |
11 |
cacagaggaagaaaatttggcagcataagaaagtggagtgagatttaataaccag--------cggatggagaacgaaacagtaccgaggcaggagagag |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50157387 |
cacaaaggaagaaaatttggcagcataagaaactggagtgaaatttactaaccagagagtaagcggatggagaatgaaacagtaccgaggcaggagagag |
50157486 |
T |
|
| Q |
103 |
agaaaaccagttttnnnnnnnnnnnnnnnttaattgactaattaataagatttgg-aaaattcataaaatggtgcattaataacc |
186 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
50157487 |
agaaaaccagtttt-aaaaaaaagaaaaattaattaactaattaataagatttggaaaaattcataaaatggtgcattgataacc |
50157570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 9456530 - 9456712
Alignment:
| Q |
11 |
cacagaggaagaaaatttggcagcataagaaagtggagtgagatttaataaccag--------cggatggagaacgaaacagtaccgaggcaggagagag |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9456530 |
cacaaaggaagaaaatttggcagcataagaaactggagtgaaatttactaaccagagagtaagcggatggagaatgaaacagtaccgaggcaggagagag |
9456629 |
T |
|
| Q |
103 |
agaaaaccagttttnnnnnnnnnnnnnnnttaattgactaattaataagatttgg-aaaattcataaaatggtgcattaataacc |
186 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9456630 |
agaaaaccagtttt--aaaaaaaaataaattaattaactaattaataagatttggaaaaattcataaaatggtgcattaataacc |
9456712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University