View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_low_8 (Length: 428)

Name: NF13614_low_8
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_low_8
NF13614_low_8
[»] chr7 (24 HSPs)
chr7 (18-316)||(4783311-4783609)
chr7 (18-316)||(4815740-4816038)
chr7 (24-316)||(4644034-4644314)
chr7 (32-274)||(4696708-4696950)
chr7 (18-274)||(4711590-4711846)
chr7 (18-274)||(4845530-4845786)
chr7 (313-419)||(4783184-4783290)
chr7 (313-419)||(4815613-4815719)
chr7 (25-274)||(4673031-4673280)
chr7 (18-274)||(4637178-4637434)
chr7 (32-274)||(4864257-4864502)
chr7 (126-274)||(4653925-4654073)
chr7 (25-274)||(4667269-4667515)
chr7 (314-390)||(4654137-4654213)
chr7 (314-398)||(4644336-4644420)
chr7 (314-415)||(4711437-4711538)
chr7 (314-398)||(4845382-4845466)
chr7 (18-274)||(4631248-4631507)
chr7 (329-398)||(4663346-4663415)
chr7 (329-415)||(4637510-4637596)
chr7 (314-415)||(4673344-4673445)
chr7 (314-398)||(4864566-4864650)
chr7 (347-398)||(4667612-4667663)
chr7 (313-348)||(4696610-4696645)
[»] chr4 (2 HSPs)
chr4 (348-401)||(18925112-18925165)
chr4 (121-190)||(18925344-18925413)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 4783609 - 4783311
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| | |||||||    
T  4783609 gattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgataagataatc 4783510  T
Q  118 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4783509 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttg 4783410  T
Q  218 ggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgatatgattctcatcacgatgaagccaaagtgaagggttg 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4783409 ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgatatgattctcatcatgatgaagccaaagtgaagggttg 4783311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 4816038 - 4815740
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| | |||||||    
T  4816038 gattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgatacgataatc 4815939  T
Q  118 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4815938 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttg 4815839  T
Q  218 ggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgatatgattctcatcacgatgaagccaaagtgaagggttg 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4815838 ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgatatgattctcatcatgatgaagccaaagtgaagggttg 4815740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 4644034 - 4644314
Alignment:
Q  24 gaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatcttggtc 123  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||    | |  ||| | |||  ||| |||| | |||||||||||||    
T  4644034 gaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttcagagccatctaacttgatacgataatcttggtc 4644133  T
Q  124 actgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttgggaatg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||           || || ||||||||    
T  4644134 actgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaacatt-----------tgatg-tgggaatg 4644221  T
Q  224 aaacttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgatatgattctcatcacgatgaagccaaagtgaagggttg 316  Q
    ||| |||||||||||||||| |||| ||| ||||||||| |||| ||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  4644222 aaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgatattattctcatcatgatgaagccaaagtgaagggttg 4644314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 4696950 - 4696708
Alignment:
Q  32 ttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatcttggtcactgaggt 131  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||  || || |  | | |||||| | | ||||||||||||    
T  4696950 ttgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatcaaatgatattttgggtcactgaggt 4696851  T
Q  132 ttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttgggaatgaaacttat 231  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||  ||||||  | |||||| ||||| ||||||||||| ||||    
T  4696850 ttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttat 4696751  T
Q  232 gtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    ||||| |||||| ||||||||| |||| ||| |||||||||||    
T  4696750 gtttaacttctcatttggtttggtttgaatgcaatattctttg 4696708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 4711846 - 4711590
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    ||||||||||||||||||||||||| ||| | || ||||||||||||||| ||| |||||||||||||||||||||  || || | || | | | || |     
T  4711846 gattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattt 4711747  T
Q  118 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttg 217  Q
    | ||||| | ||||  ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||  | || ||| |||||||     
T  4711746 tgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgttt 4711647  T
Q  218 ggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    ||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  4711646 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttg 4711590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 4845786 - 4845530
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    |||||| |||||| ||||||||||||||| |||| |||||||| || ||| ||| || ||||||  |||||||||| |||  ||| |||| || |||||     
T  4845786 gattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaataataatt 4845687  T
Q  118 ttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgtt 216  Q
    |  |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||  ||||||||||| |||| |||||||    
T  4845686 taagtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgtt 4845588  T
Q  217 gggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
     |||| |||| |||||||||||||| | ||||||||||| || ||| |||||||||||    
T  4845587 cggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatattctttg 4845530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 4783290 - 4783184
Alignment:
Q  313 gttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtg 412  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783290 gttgttgtttacttcaacagagaaaagtgcataagaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtg 4783191  T
Q  413 atgatgt 419  Q
    |||||||    
T  4783190 atgatgt 4783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 4815719 - 4815613
Alignment:
Q  313 gttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtg 412  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815719 gttgttgtttacttcaacagagaaaagtgcataagaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtg 4815620  T
Q  413 atgatgt 419  Q
    |||||||    
T  4815619 atgatgt 4815613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 274
Target Start/End: Original strand, 4673031 - 4673280
Alignment:
Q  25 accaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatcttggtca 124  Q
    |||||||||||||||||||||| | || |||||||| |||||| ||| |||||||||||||||||| ||  || || | || | |||||||| | |||||    
T  4673031 accaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaatgataatttgggtca 4673130  T
Q  125 ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttgggaatga 224  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||  ||  |||  ||| |||  || || | |||||||    
T  4673131 ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatga 4673230  T
Q  225 aacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    || |||||||||||||||| || || |||||||||||  || ||||||||    
T  4673231 aatttatgtttagcttctcattgggcttgatttggatacaaaattctttg 4673280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 4637178 - 4637434
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| | ||||||||||||  ||  |  ||  |   || | ||  ||||     
T  4637178 gattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaatagtaatt 4637277  T
Q  118 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttg 217  Q
    | ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||| ||||||  |||||||| || ||||     
T  4637278 tgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgtta 4637377  T
Q  218 ggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    ||||||||| ||||||||| ||| || |||||||||||||| ||| |||||||||||    
T  4637378 ggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttg 4637434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 32 - 274
Target Start/End: Original strand, 4864257 - 4864502
Alignment:
Q  32 ttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatcttggtcactgaggt 131  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||  || || | || | || ||| | | ||||| ||||||    
T  4864257 ttgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt 4864356  T
Q  132 ttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttg---ggaatgaaact 228  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| |||||| | ||||||  ||||||  |||| ||| | || |||   ||||||||| |    
T  4864357 ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagt 4864456  T
Q  229 tatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    ||||||||||||||| |||| ||||||||| ||| |||||||||||    
T  4864457 tatgtttagcttctcatttgatttgatttgaatgcaatattctttg 4864502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 4653925 - 4654073
Alignment:
Q  126 tgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttgggaatgaa 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||  ||||||  | |||||||||||||||||||||||    
T  4653925 tgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaa 4654024  T
Q  226 acttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    | |||||||||||||||  || |||| || ||||||| |||||||||||    
T  4654025 agttatgtttagcttcttattcggttggacttggatgcaatattctttg 4654073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 274
Target Start/End: Original strand, 4667269 - 4667515
Alignment:
Q  25 accaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatcttggtca 124  Q
    ||||||| ||||||||||||||||||| | |||||||| |||| |||  ||||||||  || |||||||  || ||||  | | |||||||| | |||||    
T  4667269 accaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaatgataatttgggtca 4667368  T
Q  125 ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtgttgttgggaatga 224  Q
    |||||||||||||||||||||||||| |||||||||||||  || |||||||| ||| ||||| |   || ||| |||||||||||||| ||||||||||    
T  4667369 ctgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagcaaa---agcatttaattggtttgtgtttttgggaatga 4667465  T
Q  225 aacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    || ||| || ||| |||||   | ||||| | |||||| |||||||||||    
T  4667466 aagttacgtctagtttctccccttgtttggtatggatgcaatattctttg 4667515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 4654137 - 4654213
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcg 390  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||    
T  4654137 ttgttgtttacttcaacagagaaaagtgcatttgagggttcaaatttttgatacgaagtagggtaaaaatgaaggcg 4654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 4644336 - 4644420
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaa 398  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||| || |  |||||||||| ||||||||||||||    
T  4644336 ttgttgtttactttgacagagaaaagtgcatttgagggttcaaaattttgatacgatgcagggtaaaaataaaggcgaagaaaaa 4644420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 4711538 - 4711437
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtga 413  Q
    |||||||||||||  ||||||||||| ||||| ||||  ||||| ||||| ||||||||||||||||||||||||| || ||||| || || ||||||||    
T  4711538 ttgttgtttactttgacagagaaaagagcattggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagtga 4711439  T
Q  414 tg 415  Q
    ||    
T  4711438 tg 4711437  T

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Target: chr7; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 4845466 - 4845382
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaa 398  Q
    |||||||||||||| ||||||||||| ||||| ||||  ||||| || || |||||||||||||||||||||||||||| |||||    
T  4845466 ttgttgtttacttcgacagagaaaagagcattggagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaataaaaa 4845382  T

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Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 4631248 - 4631507
Alignment:
Q  18 gattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatgataatc 117  Q
    |||||| |||| |||||||||||||||| || || | |||||||| ||||||||  ||||||||   | |||||||| || |||  || | ||| || |     
T  4631248 gattttcaccagcgttgactctataaactgtttccatagctttgttgttaagaatctggtattcaccgctgtcaaaatcaagtatctttaaatggtagtt 4631347  T
Q  118 ttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaattggtttgtg------ 211  Q
       ||||||||| || |||||||||||||||||||||||||||||||  || |||||||| ||| ||||  |||    ||| ||||||||||||          
T  4631348 cgtgtcactgagattagtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagctaaac---catttaattggtttgtgtttgta 4631444  T
Q  212 ttgttgggaatgaaacttatgtttagcttctcgtttggtttgatttggatggaatattctttg 274  Q
    || |||||||||||| |||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4631445 tttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 4631507  T

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Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 4663346 - 4663415
Alignment:
Q  329 acagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaa 398  Q
    ||||||||||||||||| |||| |||||| |||| ||| || |||| |||||||||||||||||||||||    
T  4663346 acagagaaaagtgcattggagggttcaaagtttttataagatgttgagtaaaaatgaaggcgaagaaaaa 4663415  T

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Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 4637510 - 4637596
Alignment:
Q  329 acagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtgatg 415  Q
    |||||||||| |||| | || | |||||| |||||||| || || |||||||||||||| |||||||||| |||||| |||||||||    
T  4637510 acagagaaaattgcactggaaggttcaaagttttgataagatgtagggtaaaaatgaagacgaagaaaaacagtggaattagtgatg 4637596  T

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Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 415
Target Start/End: Original strand, 4673344 - 4673445
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtga 413  Q
    |||||||| ||||  | |||||||| |||||| ||||  |||||  ||| | || || ||||||||||||||||||||||||||| |||||| |||||||    
T  4673344 ttgttgttaactttgatagagaaaattgcattggagggatcaaagcttttagataaatttgggtaaaaatgaaggcgaagaaaaacagtggaattagtga 4673443  T
Q  414 tg 415  Q
    ||    
T  4673444 tg 4673445  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 4864566 - 4864650
Alignment:
Q  314 ttgttgtttacttcaacagagaaaagtgcatttgaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaa 398  Q
    ||||||||||||||||| || |||| ||| || || | |||||| |||||||| || ||||||||||||||||| |||| |||||    
T  4864566 ttgttgtttacttcaactgaaaaaaatgctttcgaaggttcaaagttttgataagatgttgggtaaaaatgaagacgaacaaaaa 4864650  T

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Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 4667612 - 4667663
Alignment:
Q  347 gaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaa 398  Q
    ||||||||||| |||||||| || |||||||||||||| |||||||||||||    
T  4667612 gaggtttcaaagttttgatacgatgttgggtaaaaatggaggcgaagaaaaa 4667663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 4696645 - 4696610
Alignment:
Q  313 gttgttgtttacttcaacagagaaaagtgcatttga 348  Q
    |||||||||||||| |||||||||||||||||||||    
T  4696645 gttgttgtttactttaacagagaaaagtgcatttga 4696610  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 18925165 - 18925112
Alignment:
Q  348 aggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatag 401  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  18925165 aggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatag 18925112  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 18925413 - 18925344
Alignment:
Q  121 gtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa 190  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |  || |||||||| ||| ||||||||    
T  18925413 gtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa 18925344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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