View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13615_high_2 (Length: 319)
Name: NF13615_high_2
Description: NF13615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13615_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 303
Target Start/End: Complemental strand, 31125648 - 31125366
Alignment:
| Q |
21 |
cacctagtaaggaaaacactgaaacgcacacaaaaatggccctctcatcatcaatcaccagcgtccacataacagccctcgacgcaatcacaaacgtaaa |
120 |
Q |
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| T |
31125648 |
cacctagtaaggaaaacactgaaacgcacacaaaaatggccctctcatcatcaatcaccagcgtccacataacagccctcgacgcaatcacaaacgtaaa |
31125549 |
T |
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| Q |
121 |
ctccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgtgtccccaccaccgcc |
220 |
Q |
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| T |
31125548 |
ctccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccctccaacactctcaacaccaacccctcctgcatccccaccaccgcc |
31125449 |
T |
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| Q |
221 |
atcgccgaaaacctcgtcgcatttcatgtctactcattcagctcattcctcttctctagtctcatcgctcttgctctcaaaca |
303 |
Q |
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| T |
31125448 |
atcgccgaaaatctcgtcgcatttcatgtctactcattcagctcatttctcttctctagtctcatcgctcttgcactgaaaca |
31125366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 2420410 - 2420276
Alignment:
| Q |
105 |
caatcacaaacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctg |
204 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||| ||||| |
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| T |
2420410 |
caatcacaaacgtaaactccctcttcactctcggcatattcatcggcctctccttcaacccaaatgaccccttcaacactctcaacacaaacccgtcctg |
2420311 |
T |
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| Q |
205 |
tgtccccaccaccgccatcgccgaaaacctcgtcg |
239 |
Q |
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| T |
2420310 |
cgtccccaccaccgacatcgtcgaaaacctcgtcg |
2420276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 10615566 - 10615433
Alignment:
| Q |
106 |
aatcacaaacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgt |
205 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||||||||||| | |||||||||||||||| |||| || || |
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| T |
10615566 |
aatcacaaacgtaaactccctcttcactctcagcatattcatcgacctttccttcaacccaaacgaccccttcaacactctcaacacaaacccgtcttgc |
10615467 |
T |
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| Q |
206 |
gtccccaccaccgccatcgccgaaaacctcgtcg |
239 |
Q |
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| T |
10615466 |
atccccaccaccgacatcgtcgaaaacctcgtcg |
10615433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 46469763 - 46469889
Alignment:
| Q |
113 |
aacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgtgtcccca |
212 |
Q |
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|||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||| | |||||||||||||| | |||| ||||| |||||| |
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| T |
46469763 |
aacgtaaactccctcttcactctcggcatattcatcgacctctccttcaacctaaacgaccccttcaacactctcaacataaacccgtcctgcatcccca |
46469862 |
T |
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| Q |
213 |
ccaccgccatcgccgaaaacctcgtcg |
239 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
46469863 |
ccaccgacatcgccgaaaacctcgtcg |
46469889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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