View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13615_low_1 (Length: 335)
Name: NF13615_low_1
Description: NF13615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13615_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35475807 - 35475571
Alignment:
| Q |
1 |
tcatcacaaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaattttttac |
100 |
Q |
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| T |
35475807 |
tcatcacaaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaattttttac |
35475708 |
T |
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| Q |
101 |
atttttaggatgaggataataagtttc-nnnnnnnnnnnnnnnngagagggataataagttggtatcgtattnnnnnnnnntgtattcagtattactatt |
199 |
Q |
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| T |
35475707 |
atttttaggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattactatt |
35475608 |
T |
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| Q |
200 |
gccataaatatagagtaagtaagaagattattgactt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35475607 |
gccataaatatagagtaagtaagaagattattgactt |
35475571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 35475084 - 35474991
Alignment:
| Q |
223 |
aagattattgacttgagagtggtatataatctaatctaatctaacctgtnnnnnnnnnn-cattttgcatacaccacaaattcatctaacatgtgcatg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35475084 |
aagattattgacttgagagtggtatataatctaatctaa-----cctgtaaaaaaaaaaacattttgcatacaccacaaattcatctaacatgtgcatg |
35474991 |
T |
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