View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13615_low_4 (Length: 227)
Name: NF13615_low_4
Description: NF13615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13615_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4271791 - 4271693
Alignment:
| Q |
20 |
ctgtgtgttgaggtgagaaaatcaaccatggtcaatcagaaattgagtccttatcacacattcacactgtcgtaacaaattaaagagatcattatcatt |
118 |
Q |
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| T |
4271791 |
ctgtgtgttgaggtgagaaaatcagccatagtcaatcagaaattgagtccttatcacacattcacactgtcctaacaaattaaagagaccattatcatt |
4271693 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 4271673 - 4271633
Alignment:
| Q |
183 |
ctcattttatcaatcaatattgttaccaatacaagaaaatg |
223 |
Q |
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| T |
4271673 |
ctcattttatcaatcaatattgttaccaatacaagaaaatg |
4271633 |
T |
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