View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13616_low_1 (Length: 413)
Name: NF13616_low_1
Description: NF13616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13616_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 29262052 - 29262360
Alignment:
| Q |
17 |
ctttcttggcacctcattgaataacctcttcatccttttatatactataaggtggatatggaatcaataaagtcctttattattatttgtactctagaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29262052 |
ctttcttggcacctcattgaataacctcttcatccttttatata-----aggtggatatggaatcaataaagtcctttattattatttgtactctagaaa |
29262146 |
T |
|
| Q |
117 |
gaaatacaacttggttgactttaacatattgtgaggact-----------------taacatgttgctgatctccctatatgctgtgtttgtactttgta |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
29262147 |
gaaatacaacttggctgactttaacatattgtgaggacttaacatatggaatgacttaacatgttactgatctccctatatgctgtgtttgtacttagta |
29262246 |
T |
|
| Q |
200 |
gctttgcggtagtaagtagtaggtggaaagtggtccccaacaaaaaacttattgttgctgatatttttgttatc---taatatctataattttgtatgag |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29262247 |
gctttgcggtagtaagtagtaggttgaaagtggtccccaacaaaaaacttattgttgctgatatttttgttatctaataatatctataattttgtatgag |
29262346 |
T |
|
| Q |
297 |
ttattggtttaata |
310 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29262347 |
ttattggtttaata |
29262360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 247 - 369
Target Start/End: Complemental strand, 29258548 - 29258423
Alignment:
| Q |
247 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaacct---tccttgtgtaatttcattatgc |
343 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
29258548 |
cttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttatttattgtcaaccttcctccttgtataatttcaatatgc |
29258449 |
T |
|
| Q |
344 |
tttgtaaacatcttggtagtagcttt |
369 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
29258448 |
tttgtagacatcttggtagtagcttt |
29258423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 29286540 - 29286658
Alignment:
| Q |
247 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaac---cttccttgtgtaatttcattatgc |
343 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||| | |||| |||| |||||||||||||||||| ||||| |
|
|
| T |
29286540 |
cttattgttgcggatatttttgttat-tgatatctataattttgcatgagttattggtttacttattgccaaccttcttccttgtgtaatttcaatatgc |
29286638 |
T |
|
| Q |
344 |
tttgtaaacatcttggtagt |
363 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
29286639 |
tatgtagacatcttggtagt |
29286658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 35234991 - 35235067
Alignment:
| Q |
247 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaaccttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
35234991 |
cttattgttgctgatatttttgttatctgatatctataattttgtatgagttattggtttacttattgccaaccttc |
35235067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University