View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13616_low_2 (Length: 212)
Name: NF13616_low_2
Description: NF13616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13616_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 26180774 - 26180942
Alignment:
| Q |
17 |
cacagacgttgacttgaaacttcaattgacaaggacacctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagca |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26180774 |
cacagacattgacttgaaacttcaattgacaaggacgcctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagca |
26180873 |
T |
|
| Q |
117 |
taagagatgcactgtcaactattcattttcaacaaatataccatcattgattcactatggccaacgaacaaggtgatatc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26180874 |
taagagatgcactgtcaactattcattttcaacaaata-----------attcactatggccaacgaacaaggtgatatc |
26180942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 1189885 - 1189976
Alignment:
| Q |
20 |
agacgttgacttgaaacttcaattgacaaggacacctataaatatgagct--gttattttaacatcaaaatacaagcaatgtatgtgtttat |
109 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1189885 |
agacgttaacttgaaacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttat |
1189976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University