View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13617_high_2 (Length: 721)
Name: NF13617_high_2
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13617_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 24 - 705
Target Start/End: Complemental strand, 12946265 - 12945583
Alignment:
| Q |
24 |
cgaacaccgatgtgtagttgcgtgatttattaactacaacagagcatatcgtgagagttcgtaaatgctattgatttgtgattgtgaccataaatatatg |
123 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
12946265 |
cgaacaccgatgtgtagttgcgtgatttattaaccgcaacatagcatatcgtgagagttagtaaatgatattgatttgtgattgtgaccataaatatatg |
12946166 |
T |
|
| Q |
124 |
attttctcca-tgtattacctttaataatcaccacaaattggcacaagnnnnnnnngtcaaaaataaaatatcaccacacattactgcgtgcaaaatatc |
222 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12946165 |
attttctccaatgtattacctttaataatcaccacaaattgccccaagtttgttttgtcgaaaataaaatatcaccacacattactgcgtgcaaaatatc |
12946066 |
T |
|
| Q |
223 |
tatgccaaagtgtggtcacaattaacaagcatgaatgaaagccaaacgtagagaaatt-aaggaccactctgaaagtagttaaccgtacaacaattccat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
12946065 |
tatgccaaagtgtggtcacaattaacaagcatgaatgaaagccaaacgtagagaaatttaaggac-actctcaaagtagttaaccgtacaacaattccat |
12945967 |
T |
|
| Q |
322 |
gttgcatcattgactctgaattaaccttttatctcttctcatttcaacaacaatggcataaccaaattcacctaattccaaacaaaactccactatggat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945966 |
gttgcatcattgactctgaattaaccttttatctcttctcatttcaacaacaatggcataaccaaattcacctaattccaaacaaaactccactatggat |
12945867 |
T |
|
| Q |
422 |
ccctatgaattcctcaaaatcaaactcaactctgatggttcactaacaagaaactacattgtgcccaccgtgccatcatcctccgatcccactaattcgc |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945866 |
ccctatgaattcctcaaaatcaaactcaactctgatggttcactaacaagaaactacattgtgcccaccgtgccatcatcctccgatcccactaattcgc |
12945767 |
T |
|
| Q |
522 |
caccgcaaccggctctctctaaggacattcccttaaacgccgctgcgaaaacctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgc |
621 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945766 |
cactgcaaccggctctctctaaagacattcccttaaacgccgctgcgaaaacctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgc |
12945667 |
T |
|
| Q |
622 |
caaactccccattattctctacttccatggtggtggtttcatcctctaccacccttcctcgctcattttccaccatccctgctc |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12945666 |
caaactccccattattctctacttccatggtggtggtttcatcctctaccacccttcctcgctcattttccaccacccctgctc |
12945583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 397 - 512
Target Start/End: Complemental strand, 12938207 - 12938092
Alignment:
| Q |
397 |
ttccaaacaaaactccactatggatccctatgaattcctcaaaatcaaactcaactctgatggttcactaacaagaaactacattgtgcccaccgtgcca |
496 |
Q |
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|||||||| ||||||||| || |||||||||||||||||| |||||||||||||| |||||||||| || ||||||||| ||| || || ||||||||| |
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| T |
12938207 |
ttccaaaccaaactccaccatcgatccctatgaattcctcgaaatcaaactcaaccctgatggttccctcacaagaaacgacaacgtccctaccgtgcca |
12938108 |
T |
|
| Q |
497 |
tcatcctccgatccca |
512 |
Q |
| |
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||||||||||||||| |
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| T |
12938107 |
ccatcctccgatccca |
12938092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 12938044 - 12937938
Alignment:
| Q |
572 |
acctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgccaaactccccattattctctacttccatggtggtggtttcatcctctacc |
671 |
Q |
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|||||||| || |||||||||| ||||||||||| |||| || || || || ||||| | ||||||||||||||||||||||||||| ||| ||||| |
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| T |
12938044 |
acctccatccgcatcttcctcccaaaccctccaccaccttcttccgcggctaagctccctctcattctctacttccatggtggtggtttcttccgctacc |
12937945 |
T |
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| Q |
672 |
acccttc |
678 |
Q |
| |
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| ||||| |
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| T |
12937944 |
atccttc |
12937938 |
T |
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Back To:
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