View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13617_low_3 (Length: 629)
Name: NF13617_low_3
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13617_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Complemental strand, 14011570 - 14011046
Alignment:
| Q |
17 |
catgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccag |
116 |
Q |
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| T |
14011570 |
catgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccag |
14011471 |
T |
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| Q |
117 |
tggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccatttgcatggaaattgtaagtttagtttattattttatgaaaacg |
216 |
Q |
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| T |
14011470 |
tggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccatttgcatggaaattgtaagtttagtttattattttatgaaaacg |
14011371 |
T |
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| Q |
217 |
acttagcaccttctgctttgaattagtgtattaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcaggtatttcttgagaaaat |
316 |
Q |
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| T |
14011370 |
atttagcaccttctgctttgaattagtgtattaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcagatatttcttgagaaaat |
14011271 |
T |
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| Q |
317 |
tgaaatatgtgaaagaaaagcaatgggcaagtgttagccatgaatcaggtatgcacattgtattagttttccttatgttaggtgaattgctccgttggat |
416 |
Q |
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| T |
14011270 |
tgaaaaatgtgaaagaaaagcaatgggcaagtgttagccatgaatcaggtatgcacattgtattagttttccttatgttaggtgaattgctccgttgaat |
14011171 |
T |
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| Q |
417 |
tttatgcttagcgttgaattatctcttggcctctttgtggggttctttctttttgtttattcataaacaaagcatggctagaatcaaagccataaattga |
516 |
Q |
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|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011170 |
tttatgcttagcgttgaattatctcttggcctatttgttgagttctttctttttgtttattcataaacaaagcatggctagaatcaaagccataaattga |
14011071 |
T |
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| Q |
517 |
aggtaaaatagaaacctcatttcta |
541 |
Q |
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| T |
14011070 |
aggtaaaatagaaacctgatttcta |
14011046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 540 - 619
Target Start/End: Complemental strand, 14011019 - 14010940
Alignment:
| Q |
540 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
619 |
Q |
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| T |
14011019 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
14010940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 3882357 - 3882515
Alignment:
| Q |
17 |
catgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3882357 |
catgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaagtgtggaaaacatatttgctgggtttgcttagagttctttacaaccag |
3882456 |
T |
|
| Q |
117 |
tggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccattt |
175 |
Q |
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| T |
3882457 |
cggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccattt |
3882515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 372 - 541
Target Start/End: Original strand, 3882763 - 3882921
Alignment:
| Q |
372 |
cattgtattagttttccttatgttaggtgaattgctccgttggattttatgcttagcgttgaattatctcttggcctctttgtggggttctttctttttg |
471 |
Q |
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| T |
3882763 |
cattgtattagttttccttttgttaggtgaattgctccgttggattttatgcttagcgtt-----------tggcctctttgtggggttctttctttttg |
3882851 |
T |
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| Q |
472 |
tttattcataaacaaagcatggctagaatcaaagccataaattgaaggtaaaatagaaacctcatttcta |
541 |
Q |
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| T |
3882852 |
tttattcataaacaaagcatggctagaatcaaagccataaattgaaggtaaaatagaaacctcatttcta |
3882921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 3882558 - 3882689
Alignment:
| Q |
246 |
attaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcaggtatttcttgagaaaattgaaatatgtgaaagaaaagcaatgggca |
345 |
Q |
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|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882558 |
attaaatatgaaaaagcatatataccaagcttcttttgcaattaactgttgcaggtatttcttgagaaaattgaaatatgtgaaagaaaagcaatgggca |
3882657 |
T |
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| Q |
346 |
agtgttagccatgaatcaggtatgcacattgt |
377 |
Q |
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| T |
3882658 |
agtgttagccatgaatcaggtatgcacattgt |
3882689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 540 - 619
Target Start/End: Original strand, 3882948 - 3883027
Alignment:
| Q |
540 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
619 |
Q |
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| T |
3882948 |
tattgttaacaaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
3883027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 39317033 - 39316923
Alignment:
| Q |
19 |
tgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtg |
118 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||| ||| ||||||||| |||| |
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| T |
39317033 |
tgtgggcaaataattgagaagatagatgggtgcaatcacgttgagtgcaagtgcggaaaacatgtctgctgggtttgcttggagatctttacaagtagtg |
39316934 |
T |
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| Q |
119 |
gtgaatgttat |
129 |
Q |
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| T |
39316933 |
atgaatgttat |
39316923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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