View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13617_low_4 (Length: 460)

Name: NF13617_low_4
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13617_low_4
NF13617_low_4
[»] chr4 (15 HSPs)
chr4 (17-327)||(50744205-50744523)
chr4 (339-437)||(621531-621630)
chr4 (339-437)||(620511-620610)
chr4 (339-437)||(49681304-49681402)
chr4 (339-438)||(27454957-27455057)
chr4 (339-429)||(31633616-31633706)
chr4 (351-438)||(21225851-21225938)
chr4 (348-426)||(49682039-49682116)
chr4 (339-416)||(23102298-23102375)
chr4 (350-429)||(11147797-11147877)
chr4 (349-429)||(11148100-11148180)
chr4 (350-438)||(21224297-21224385)
chr4 (349-435)||(21226521-21226606)
chr4 (367-438)||(27455708-27455780)
chr4 (351-429)||(31632435-31632512)
[»] chr8 (6 HSPs)
chr8 (339-437)||(14791449-14791548)
chr8 (347-438)||(20112271-20112362)
chr8 (339-438)||(14790713-14790814)
chr8 (346-435)||(20111539-20111629)
chr8 (339-421)||(14865013-14865095)
chr8 (346-413)||(21190091-21190158)
[»] chr5 (13 HSPs)
chr5 (339-437)||(5348501-5348600)
chr5 (339-438)||(5347764-5347865)
chr5 (339-438)||(36429323-36429423)
chr5 (348-437)||(31808327-31808417)
chr5 (340-438)||(29500050-29500150)
chr5 (367-438)||(36430060-36430132)
chr5 (340-438)||(36681845-36681942)
chr5 (356-426)||(21012417-21012487)
chr5 (355-437)||(29500700-29500782)
chr5 (362-438)||(36681101-36681175)
chr5 (377-438)||(7491330-7491392)
chr5 (362-410)||(33136611-33136659)
chr5 (356-429)||(27915056-27915129)
[»] chr3 (17 HSPs)
chr3 (339-437)||(1576527-1576626)
chr3 (339-437)||(1577506-1577604)
chr3 (339-437)||(54560812-54560911)
chr3 (339-438)||(47471470-47471570)
chr3 (339-438)||(50838253-50838353)
chr3 (339-437)||(50837501-50837599)
chr3 (339-438)||(54560074-54560175)
chr3 (349-438)||(43546417-43546507)
chr3 (340-436)||(28539353-28539448)
chr3 (328-417)||(42078648-42078739)
chr3 (339-410)||(50382763-50382834)
chr3 (367-438)||(47470763-47470835)
chr3 (339-429)||(50381894-50381984)
chr3 (379-429)||(31799551-31799601)
chr3 (339-438)||(35942139-35942241)
chr3 (347-435)||(35942774-35942864)
chr3 (351-423)||(31800374-31800446)
[»] chr1 (10 HSPs)
chr1 (339-435)||(47445029-47445126)
chr1 (351-436)||(36475326-36475411)
chr1 (340-438)||(47445769-47445868)
chr1 (353-437)||(27585345-27585429)
chr1 (355-437)||(36475966-36476049)
chr1 (339-426)||(45575970-45576056)
chr1 (355-435)||(27585983-27586062)
chr1 (356-406)||(26991044-26991094)
chr1 (356-407)||(24646463-24646514)
chr1 (340-405)||(786778-786843)
[»] scaffold0102 (2 HSPs)
scaffold0102 (340-438)||(33138-33238)
scaffold0102 (339-438)||(32392-32493)
[»] chr6 (9 HSPs)
chr6 (339-438)||(30710273-30710372)
chr6 (339-438)||(15347473-15347574)
chr6 (339-438)||(17732810-17732910)
chr6 (339-437)||(6008682-6008781)
chr6 (347-429)||(15348200-15348283)
chr6 (339-437)||(17732056-17732155)
chr6 (339-438)||(30709532-30709630)
chr6 (349-438)||(6009422-6009512)
chr6 (379-423)||(2953353-2953397)
[»] chr2 (9 HSPs)
chr2 (339-437)||(10256485-10256583)
chr2 (339-438)||(4592668-4592769)
chr2 (341-437)||(4593399-4593496)
chr2 (340-435)||(33002919-33003013)
chr2 (346-429)||(22539117-22539199)
chr2 (339-410)||(45114916-45114987)
chr2 (350-423)||(38018440-38018514)
chr2 (367-438)||(10255738-10255810)
chr2 (350-423)||(33003729-33003803)
[»] chr7 (11 HSPs)
chr7 (339-426)||(36068113-36068201)
chr7 (339-429)||(3987240-3987330)
chr7 (339-438)||(36067337-36067435)
chr7 (341-429)||(32390894-32390982)
chr7 (339-437)||(3986570-3986667)
chr7 (380-429)||(6733142-6733191)
chr7 (351-438)||(30480689-30480778)
chr7 (377-429)||(32390005-32390057)
chr7 (380-422)||(3346030-3346072)
chr7 (341-422)||(6733059-6733141)
chr7 (383-429)||(41589267-41589313)
[»] scaffold0169 (2 HSPs)
scaffold0169 (355-429)||(26741-26815)
scaffold0169 (356-429)||(27406-27477)
[»] scaffold0020 (1 HSPs)
scaffold0020 (347-429)||(1997-2079)
[»] scaffold0380 (1 HSPs)
scaffold0380 (361-422)||(7550-7611)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 50744523 - 50744205
Alignment:
Q  17 attaagtaagaagatttaagaggatacccgtggtcgaagcttgtgtcgaagtgaattgttacttccaaggtctaaaagggcaagttgttgatggggcaag 116  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50744523 attaagtaagaagatt-aagagggtacccgtggttgaagcttgtgtcgaagtgaattgttacttccaaggtctaaaagggcaagttgttgatggggcaag 50744425  T
Q  117 aggtaaggaaattatgatttgagaagaagagaaagacgatgagaactagtttggacaagaggtaaaggagattatgaaattgactcgccggaataacttc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50744424 aggtaaggaaattatgatttgagaagaagagaaagacgatgagaactagtctggacaagaggtaaaggagattatgaaattgactcgccggaatcacttc 50744325  T
Q  217 gatgttaaatgttgcggctgtggtggagggcttttcgtcggagtgagt---------gactcggttggagaaagcaacgtaattgggcttcggttttcag 307  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  50744324 gatgttaaatgtttcggtggtggtggagggcttttcgtcggagtgagtgagtgactcgactcggttggagaaagcaacgtaattgggcttcggttttcag 50744225  T
Q  308 tgcctaacccattatatgaa 327  Q
    |||| |||||||||||||||    
T  50744224 tgcccaacccattatatgaa 50744205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 621630 - 621531
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  621630 caaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 620511 - 620610
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  620511 caaaaatccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 49681304 - 49681402
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgact 437  Q
    ||||||| |||||||||||||| |||||||||||||| | |||||||||||||||| || | ||||| ||||||||||| ||||||||||| |||||||    
T  49681304 caaaaactcccctgatttttagaaaacttcaaaaacccctctgaaattgtcaaacgctagttaattatcccctccgtttgttttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 27454957 - 27455057
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||| ||||||| ||||||| |  ||||||| |||||||| | ||||||| |||||||||||| ||||||||||| |||||||    
T  27454957 caaaaacccccctgatttttaagaaacttgaaaaacccctttgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgact 27455056  T
Q  438 a 438  Q
    |    
T  27455057 a 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 31633706 - 31633616
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    ||||||||||| | ||||||| ||||||||||||||| || | |||||||||||| ||| || |||||||||||||||| ||| |||||||    
T  31633706 caaaaacccccttaatttttaagaaacttcaaaaacccccataaaattgtcaaacattagtccattaccccctccgtttgtttgggctgtt 31633616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 21225851 - 21225938
Alignment:
Q  351 tgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||| ||||||| ||||||  |  |||||||||||||| ||| |||||||||| |||||||| ||||||||||| ||||||||    
T  21225851 tgatttttaagaaactttaaaaacacctttgaaattgtcaaaccttagtcaattaccctctccgtttgttttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 49682116 - 49682039
Alignment:
Q  348 ccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggct 426  Q
    |||| ||||||| ||||||||||||| | |||||||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  49682116 ccctaatttttaagaaacttcaaaaatc-ccctgaaattatcaatcgttagtcaattaccccctccatttattttggct 49682039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 23102375 - 23102298
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtt 416  Q
    ||||||||||||||| ||||   |||||||||| ||| ||||||||||||||| ||||  ||||||||||||||||||    
T  23102375 caaaaacccccctgaattttgcaaaacttcaaatacccccctgaaattgtcaagcgtttgtcaattaccccctccgtt 23102298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 11147797 - 11147877
Alignment:
Q  350 ctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgtt 429  Q
    |||| ||||| |||||||||||||   || |||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  11147797 ctgacttttaagaaacttcaaaaattcccttgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgtt 11147877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 11148180 - 11148100
Alignment:
Q  349 cctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    ||||| ||||| |||||||||||||||    ||||||||||||| |||| ||||||||||||||||||| |||||| ||||    
T  11148180 cctgacttttaagaaacttcaaaaacccttatgaaattgtcaaatgttagtcaattaccccctccgtttgttttggttgtt 11148100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 438
Target Start/End: Original strand, 21224297 - 21224385
Alignment:
Q  350 ctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||||  ||| |||||||||  |  |||||||||||||| ||| |||||| ||| |||||||||||||||||||| ||||||||    
T  21224297 ctgatttttaaaaaatttcaaaaacacctatgaaattgtcaaaccttagtcaattcccctctccgtttattttggctgttaaatgacta 21224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 21226606 - 21226521
Alignment:
Q  349 cctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatga 435  Q
    ||||| ||||| |||| |||||||||| | |||||||||| |||| ||| ||||||||||||||||||| |||||||| || |||||    
T  21226606 cctgacttttaagaaatttcaaaaacc-ctctgaaattgttaaacattagtcaattaccccctccgtttgttttggctattaaatga 21226521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 27455780 - 27455708
Alignment:
Q  367 tcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||| ||||||||||| |||| |||| |||||||| ||||||||||| ||||||| ||| ||||||||    
T  27455780 tcaaaaacccccctgaaattgccaaatgttagtcaattacccccctccgtttgttttggcagttaaatgacta 27455708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 31632435 - 31632512
Alignment:
Q  351 tgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatt-accccctccgtttattttggctgtt 429  Q
    ||||||||| |||||||||||| |||||   |||||||||||||||| ||||||  |||||||||||| ||| |||||||    
T  31632435 tgatttttaagaaacttcaaaaccctcct--aaattgtcaaacgttagtcaattgcccccctccgtttgtttgggctgtt 31632512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 14791548 - 14791449
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  14791548 caaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 20112362 - 20112271
Alignment:
Q  347 cccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||||||| ||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  20112362 cccctgatttttaagaaacttcaaaaaccccactgaaattatcaaacgttagtcaattaccccctccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 14790713 - 14790814
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc--tccgtttattttggctgttgaatgac 436  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||||| ||||||||||| | ||||    
T  14790713 caaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgac 14790812  T
Q  437 ta 438  Q
    ||    
T  14790813 ta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 20111539 - 20111629
Alignment:
Q  346 ccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatga 435  Q
    |||||| |||||||||||| |||||||| |  ||| |||||||||||| ||| ||||||| |||||||||||| |||| |||||| |||||    
T  20111539 ccccctaatttttaggaaatttcaaaaatcctcctaaaattgtcaaacattagtcaattacccccctccgtttgttttagctgttaaatga 20111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 14865013 - 14865095
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattt 421  Q
    ||||||||||||||| ||||   |||  ||||||||| ||||||||||||||| |||   |||||||||||||||||| ||||    
T  14865013 caaaaacccccctgaattttgtaaaatgtcaaaaacccccctgaaattgtcaagcgtctgtcaattaccccctccgttaattt 14865095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 21190091 - 21190158
Alignment:
Q  346 ccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctcc 413  Q
    |||| ||| ||||| | ||||| ||||| |||| ||||||| |||||||||| |||||||||||||||    
T  21190091 ccccttgaattttaaggaactttaaaaaactccatgaaattatcaaacgttagtcaattaccccctcc 21190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 5348600 - 5348501
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  5348600 caaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 5347764 - 5347865
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc--tccgtttattttggctgttgaatgac 436  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||||| ||||||||||| | ||||    
T  5347764 caaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgac 5347863  T
Q  437 ta 438  Q
    ||    
T  5347864 ta 5347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 36429323 - 36429423
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||| |||||||||||||| ||||||||||||||  |||||||||| |||||||| | ||||||| |||||||||||| ||||||||||| |||||||    
T  36429323 caaaaatccccctgatttttaagaaacttcaaaaacgcccctgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgact 36429422  T
Q  438 a 438  Q
    |    
T  36429423 a 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 31808327 - 31808417
Alignment:
Q  348 ccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||||||||| ||||||||||||||   ||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||| |||||||    
T  31808327 ccctgatttttaagaaacttcaaaaactctcctgaaattgttaaacgttagtcaattacccccctcagtttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 438
Target Start/End: Original strand, 29500050 - 29500150
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccc-tgaaattgtcaaacgttaatcaattacccc-ctccgtttattttggctgttgaatgact 437  Q
    ||||| |||||| ||||||| ||||||||| ||||||| | | |||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||    
T  29500050 aaaaatccccctaatttttaagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctctccgtttgttttggctcttaaatgact 29500149  T
Q  438 a 438  Q
    |    
T  29500150 a 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 36430132 - 36430060
Alignment:
Q  367 tcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc-tccgtttattttggctgttgaatgacta 438  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||| ||||||||    
T  36430132 tcaaaaacccccctgaaattgccaaacgttagtcaattacccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 36681942 - 36681845
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgacta 438  Q
    ||||| ||||||||||||||  ||||||||||  || || |||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||    
T  36681942 aaaaatccccctgatttttaaaaaacttcaaa--cccccatgaaattgtcaaacgttagtcaattacccccctccgtttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 21012487 - 21012417
Alignment:
Q  356 tttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggct 426  Q
    |||| |||||||||||| ||  | ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  21012487 tttaagaaacttcaaaaccccacttgaaattgtcaaacgttaatcaattaccccctctgtttgttttggct 21012417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 29500782 - 29500700
Alignment:
Q  355 ttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgact 437  Q
    ||||| |||| ||||||||  ||| |||||||||||||||||| |||||||||  |||||||| |||||| |||| |||||||    
T  29500782 ttttaagaaagttcaaaaaaatccttgaaattgtcaaacgttagtcaattaccttctccgtttgttttggttgttaaatgact 29500700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 36681101 - 36681175
Alignment:
Q  362 aaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    |||||||||||||| |  |||||||||||||||||| ||||||||||||| ||||  ||||||||||| ||||||||    
T  36681101 aaacttcaaaaacc-ctttgaaattgtcaaacgttagtcaattaccccct-cgttcgttttggctgttaaatgacta 36681175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 7491330 - 7491392
Alignment:
Q  377 ccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgacta 438  Q
    |||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||| ||||||||    
T  7491330 ccctgaaattgtgaaacgttagtcaattaccccccttcgtttgttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 33136659 - 33136611
Alignment:
Q  362 aaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc 410  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||    
T  33136659 aaacttcaaaaactcccctgaaattgttaaacgttagtcaattaccccc 33136611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 27915129 - 27915056
Alignment:
Q  356 tttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||| |||||||||||||  ||| | ||||||||||| |||| |||||||||||||   |||| ||||||||||    
T  27915129 tttaagaaacttcaaaaaaatccattaaattgtcaaatgttagtcaattaccccctttatttactttggctgtt 27915056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 1576527 - 1576626
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| |||||||| || |||||||    
T  1576527 caaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 1577604 - 1577506
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  1577604 caaaaacccccctgatttttaggaaacttcaaaaacc-ccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 54560911 - 54560812
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  54560911 caaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 47471570 - 47471470
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| |||| ||||||||||| |||||||    
T  47471570 caaaaccccccctgatttttaggaaacttcaaaaacccccctgaaattgccaaacgttagtcaattacccccctctgtttgttttggctgttaaatgact 47471471  T
Q  438 a 438  Q
    |    
T  47471470 a 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 50838353 - 50838253
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||||| ||||||| ||||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  50838353 caaaaacccccctaatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 50838254  T
Q  438 a 438  Q
    |    
T  50838253 a 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 50837501 - 50837599
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  50837501 caaaaacccccctgatttttagaaaatttcaaaaacc-ccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 54560074 - 54560175
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc--tccgtttattttggctgttgaatgac 436  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||| ||||||||||||  ||||||| ||||||||||| | ||||    
T  54560074 caaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgac 54560173  T
Q  437 ta 438  Q
    ||    
T  54560174 ta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 43546417 - 43546507
Alignment:
Q  349 cctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||||| ||||||||||||||| | |||||||| |||||||| | ||||||| |||||||||||| ||||||||||| ||||||||    
T  43546417 cctgatttttaagaaacttcaaaaacccctctgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 28539448 - 28539353
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgac 436  Q
    ||||| || ||||||||||| |||||||||||| || || | ||||||| |||||||| ||||||| || |||||||| ||||||||||| ||||||    
T  28539448 aaaaatcctcctgatttttaagaaacttcaaaaccc-ccataaaattgttaaacgttagtcaattatcctctccgtttgttttggctgttaaatgac 28539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 42078739 - 42078648
Alignment:
Q  328 gagtaaataggcaaaaacccccctgatttttaggaaacttcaaaaacctc--cctgaaattgtcaaacgttaatcaattaccccctccgttt 417  Q
    |||| |||||||||||||| |||| ||||||| |||||||||||||      ||| |||||||||||||||| |||||||||||||||||||    
T  42078739 gagtgaataggcaaaaaccaccctaatttttaagaaacttcaaaaaaaaaatcctaaaattgtcaaacgttagtcaattaccccctccgttt 42078648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 50382834 - 50382763
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc 410  Q
    ||||||| ||||||| ||||| ||||||||||| ||| || |||||| ||||||||||| ||||||||||||    
T  50382834 caaaaactcccctgacttttaagaaacttcaaacacccccatgaaatggtcaaacgttagtcaattaccccc 50382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 47470763 - 47470835
Alignment:
Q  367 tcaaaaacctccctgaaattgtcaaacgttaatcaattacccc-ctccgtttattttggctgttgaatgacta 438  Q
    ||||||| | |||||||||| |||||||| | ||||||||||| |||||||| ||||||||||| ||||||||    
T  47470763 tcaaaaatccccctgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 50381894 - 50381984
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgtt 429  Q
    |||||||||| ||||  |||| |||||||||||  || | ||||||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  50381894 caaaaacccctctgacatttaagaaacttcaaatccc-ctctgaaattgtcaaacgttagtcaattacccccctctgtttgttttggctgtt 50381984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 31799551 - 31799601
Alignment:
Q  379 ctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||| |||||    
T  31799551 ctgaaattgtcaaatgttagtcaattaccccctccgtttgttttgactgtt 31799601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 35942139 - 35942241
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgt----ttattttggctgttgaatg 434  Q
    ||||||| | ||||||||||| ||||||| ||||  | ||||||||||||||||||||| |||| |||||||||| |    || ||||||||||| ||||    
T  35942139 caaaaactctcctgatttttaagaaactttaaaactc-ccctgaaattgtcaaacgttagtcaactaccccctccctccatttgttttggctgttaaatg 35942237  T
Q  435 acta 438  Q
    ||||    
T  35942238 acta 35942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 35942864 - 35942774
Alignment:
Q  347 cccctgatttttaggaaacttcaaaaacctccct-gaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatga 435  Q
    ||||||| ||||| |||||||||||||   |||| |||||||| |||||||| |||||||| ||||||| ||| |||||| |||| |||||    
T  35942864 cccctgacttttatgaaacttcaaaaaaaccccttgaaattgttaaacgttagtcaattacccccctccatttgttttggttgttaaatga 35942774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 31800446 - 31800374
Alignment:
Q  351 tgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttg 423  Q
    ||||||||| |||||||| |||||  |  | ||||||| |||||||| ||| ||||||||||||||| |||||    
T  31800446 tgatttttaagaaacttctaaaactcctataaaattgtgaaacgttagtcagttaccccctccgtttgttttg 31800374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 47445029 - 47445126
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatga 435  Q
    ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||    
T  47445029 caaaaccccccctgattttcaggaaacttcaaaaacccccatgaaattgtcaaacgttagtcaattacccccctccgtttattttggctgttaaatga 47445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 36475326 - 36475411
Alignment:
Q  351 tgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgac 436  Q
    ||||||||| ||||||||||||    |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  36475326 tgatttttaagaaacttcaaaagaaaccctgaaattgttaaacgttagtcaattaccccctccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 47445868 - 47445769
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgacta 438  Q
    |||| ||||||||||||||| |||||||||||||   |||||||||| |||||||||| |||||||| ||||||| ||| |||||| |||| ||||||||    
T  47445868 aaaatcccccctgatttttaagaaacttcaaaaaaacccctgaaattatcaaacgttagtcaattacccccctccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 27585345 - 27585429
Alignment:
Q  353 atttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc-tccgtttattttggctgttgaatgact 437  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||| | ||||| ||||||||||| |||||||    
T  27585345 atttttaagaaacttcaaaaacc-ccctgaaattgtcaaacgttagtcgattacccccattcgtttgttttggctgttaaatgact 27585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 36476049 - 36475966
Alignment:
Q  355 ttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    ||||| ||||||||||||||| || ||||||||| |||||||| |||||||| ||||||| ||| ||||||||||| |||||||    
T  36476049 ttttaagaaacttcaaaaacccccatgaaattgttaaacgttagtcaattacccccctccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 45575970 - 45576056
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccc-tgaaattgtcaaacgttaatcaattaccccctccgtttattttggct 426  Q
    ||||||||||| |||||||||  |||||||||||  ||||| | |||||||||||||||| ||||||||||||||||||| ||| ||||    
T  45575970 caaaaacccccatgatttttaaaaaacttcaaaa--ctcccataaaattgtcaaacgttagtcaattaccccctccgtttgtttgggct 45576056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 27586062 - 27585983
Alignment:
Q  355 ttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatga 435  Q
    ||||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| ||| || |||||||| |||||    
T  27586062 ttttaagaaacttcaaaaaactcc-tgaaattgttaaacgttagtcaattaccccctccatttgttatggctgttaaatga 27585983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 26991094 - 26991044
Alignment:
Q  356 tttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac 406  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  26991094 tttaagaaacttcaaaaacttccctaaaattgtcaaacgttaatcaattac 26991044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 24646514 - 24646463
Alignment:
Q  356 tttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattacc 407  Q
    |||| |||||||||||||||  | ||||||||||||||||||||||||||||    
T  24646514 tttaagaaacttcaaaaaccctcatgaaattgtcaaacgttaatcaattacc 24646463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 786778 - 786843
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta 405  Q
    ||||| |||||||||||||| ||||||||||||| | || | ||||| |||||||||| |||||||    
T  786778 aaaaatccccctgatttttaagaaacttcaaaaaaccccataaaattatcaaacgttagtcaatta 786843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 33238 - 33138
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttc-aaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  33238 aaaaactcccctgatttttaggaaacttccaaaaacccccctgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 33139  T
Q  438 a 438  Q
    |    
T  33138 a 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 32392 - 32493
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctcc-ctgaaattgtcaaacgttaatcaattacccc-ctccgtttattttggctgttgaatgac 436  Q
    |||||| ||| |||||||||| ||||||||||||||| || | |||||| |||||||||| ||||| ||||| |||||||| ||||||||||| ||||||    
T  32392 caaaaatccctctgatttttaagaaacttcaaaaaccccctcggaaattatcaaacgttagtcaataacccctctccgtttgttttggctgttaaatgac 32491  T
Q  437 ta 438  Q
    ||    
T  32492 ta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 30710372 - 30710273
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc-tccgtttattttggctgttgaatgact 437  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| || |||| ||||||||||| |||||||    
T  30710372 caaaaacccccctgatttttaggaaacttcaaaaacc-ccctgaaattgccaaacgttagtcaattacccccatctgtttgttttggctgttaaatgact 30710274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 15347473 - 15347574
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc--tccgtttattttggctgttgaatgac 436  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||||| ||||||||||| | ||||    
T  15347473 caaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgac 15347572  T
Q  437 ta 438  Q
    ||    
T  15347573 ta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 17732910 - 17732810
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgttgaatgact 437  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||  ||||||| ||||||||||| ||||||||||| |||||||    
T  17732910 caaaaaaccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagccaattacccccctccgtttgttttggctgttaaatgact 17732811  T
Q  438 a 438  Q
    |    
T  17732810 a 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 6008682 - 6008781
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||| ||||| | |||||||| ||| ||||||||||| |||||||    
T  6008682 caaaaacctccctgatttttaggaaacttcaaaaagccccctgaaattgacaaacgttagtcaatcacccccctccatttgttttggctgttaaatgact 6008781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 429
Target Start/End: Complemental strand, 15348283 - 15348200
Alignment:
Q  347 cccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc-tccgtttattttggctgtt 429  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||| ||||||| |||||||||||    
T  15348283 cccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccttccgtttgttttggctgtt 15348200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 17732056 - 17732155
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||||| ||||||||||||||| ||| |||||||| | ||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  17732056 caaaaatccccctgatttttagaaaatttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 30709532 - 30709630
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    |||||| |||||||||||||| ||||||||||||||  | |||||||| |||||||| | || |||||||||||||||| ||||||||||| ||||||||    
T  30709532 caaaaatccccctgatttttaagaaacttcaaaaacgcctctgaaattatcaaacgtcagtc-attaccccctccgtttgttttggctgttaaatgacta 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 6009512 - 6009422
Alignment:
Q  349 cctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgacta 438  Q
    ||||||||||| ||||||||||||||  |||||||||| |||||||||| ||||||| ||| |||||||| ||||||||||| ||||||||    
T  6009512 cctgatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaattatccctctccgtttgttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 2953353 - 2953397
Alignment:
Q  379 ctgaaattgtcaaacgttaatcaattaccccctccgtttattttg 423  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||    
T  2953353 ctgaaattgtcaaacgttagtcaattaccccttcggtttgttttg 2953397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 10256583 - 10256485
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattacccc-ctccgtttattttggctgttgaatgact 437  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||| |||||||| || |||||||    
T  10256583 caaaaacccccctgatttctaggaaacttcaaaaacc-ccctgaaattgccaaacgttagtcaattaccccgctccgtttgttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 4592668 - 4592769
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc--tccgtttattttggctgttgaatgac 436  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||| ||||||||||||  ||||||| ||||||||||| | ||||    
T  4592668 caaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgac 4592767  T
Q  437 ta 438  Q
    ||    
T  4592768 ta 4592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 4593496 - 4593399
Alignment:
Q  341 aaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgttgaatgact 437  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||| ||||||| | ||||||| |||||||||||| ||||||||||| |||||||    
T  4593496 aaaaaccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgtcagtcaattatccccctccgtttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 435
Target Start/End: Original strand, 33002919 - 33003013
Alignment:
Q  340 aaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatga 435  Q
    ||||| |||| ||||||||| |||||||||||||| ||  |||||||||||||||||| | ||||||||||||||||| |||||| |||| |||||    
T  33002919 aaaaaaccccttgatttttaagaaacttcaaaaac-tcgatgaaattgtcaaacgttagttaattaccccctccgtttgttttggatgttaaatga 33003013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 22539199 - 22539117
Alignment:
Q  346 ccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||||||| |||||  |||||||||||| | || |||||||||||||||||| ||||||| ||||||||| | |||||||||||    
T  22539199 ccccctgacttttaaaaaacttcaaaaaaccccatgaaattgtcaaacgttagtcaatta-cccctccgtatgttttggctgtt 22539117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 45114987 - 45114916
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc 410  Q
    ||||||||||| ||| ||||| |||||||||||| ||  | |||||||||||||||||| | ||||||||||    
T  45114987 caaaaacccccttgacttttaagaaacttcaaaacccctcatgaaattgtcaaacgttagttaattaccccc 45114916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 38018440 - 38018514
Alignment:
Q  350 ctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccc-tccgtttattttg 423  Q
    |||| ||||| |||| ||||||||| | | |||||| ||||||||||| |||||||||||| |||||||||||||    
T  38018440 ctgacttttacgaaatttcaaaaactttcatgaaatcgtcaaacgttagtcaattacccccttccgtttattttg 38018514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 10255738 - 10255810
Alignment:
Q  367 tcaaaaacctccctgaaattgtcaaacgttaatcaattacccc-ctccgtttattttggctgttgaatgacta 438  Q
    ||||||| | || ||||||| |||||||| | ||||||||||| |||||||| ||||||||||| ||||||||    
T  10255738 tcaaaaagccccttgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 33003803 - 33003729
Alignment:
Q  350 ctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttg 423  Q
    |||||||||| ||||||| |||||   || |||||||||||||||||  |||||||| |||||||| ||||||||    
T  33003803 ctgatttttaagaaacttaaaaaattcccttgaaattgtcaaacgttggtcaattacccccctccgcttattttg 33003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 36068201 - 36068113
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggct 426  Q
    |||||| ||||||||||||||||||| |||||||| | |||||||||||||||| |||| |||||||| ||||||||||| ||||||||    
T  36068201 caaaaaaccccctgatttttaggaaatttcaaaaaaccccctgaaattgtcaaatgttagtcaattacccccctccgtttgttttggct 36068113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 3987330 - 3987240
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||||| || ||||||||||| ||||||| |||||   || |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  3987330 caaaaatcctcctgatttttaagaaacttaaaaaaaaaccttgaaattgtcaaacgttagtcaattaccccctccgtttgttttggctgtt 3987240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 36067337 - 36067435
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgacta 438  Q
    ||||| ||||||||||||||| |||| || ||||| | |||||||||  | |||| ||| ||||||||||||||||||||||||||| ||| ||||||||    
T  36067337 caaaatcccccctgatttttaagaaattttaaaaaaccccctgaaatatt-aaacattagtcaattaccccctccgtttattttggccgttaaatgacta 36067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 32390982 - 32390894
Alignment:
Q  341 aaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattac-cccctccgtttattttggctgtt 429  Q
    |||||||||||||  |||| ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||||| ||||| |||||    
T  32390982 aaaacccccctgacatttaagaaacttcaaaaatc-ccctgaaattatcaaacgttagtcaattacccccctccgtttgttttgactgtt 32390894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 3986570 - 3986667
Alignment:
Q  339 caaaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgttgaatgact 437  Q
    ||||||||||| | ||||||| |||| |||||||| | | || ||||||| ||| |||||||||||| ||||||||||| |||||| |||| |||||||    
T  3986570 caaaaacccccttaatttttaagaaatttcaaaaaaccctctaaaattgtaaaatgttaatcaatta-cccctccgtttgttttggttgttaaatgact 3986667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 6733191 - 6733142
Alignment:
Q  380 tgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  6733191 tgaaattgtcaaacgttagccaattacccccttcgtttattttggctgtt 6733142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 30480778 - 30480689
Alignment:
Q  351 tgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgttt-attttggctgttgaatgacta 438  Q
    ||||||||| || ||||||||||   || |||||||||||||||||| ||||||| ||||||||||||  ||||||||||| ||||||||    
T  30480778 tgatttttaagatacttcaaaaaatcccttgaaattgtcaaacgttagtcaattatccccctccgtttggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 32390005 - 32390057
Alignment:
Q  377 ccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||    
T  32390005 ccctgaaattgtcaaacgttagtcaattatcccctccatttattttggttgtt 32390057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 3346030 - 3346072
Alignment:
Q  380 tgaaattgtcaaacgttaatcaattaccccctccgtttatttt 422  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  3346030 tgaaattgtcaaacgttagtcaattacaccctccgtttttttt 3346072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 6733059 - 6733141
Alignment:
Q  341 aaaacccccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttatttt 422  Q
    |||| |||||||| |||||  |||||||||||||  || ||||||||| |||||||| ||||||| || ||||||||| ||||    
T  6733059 aaaaaccccctgacttttaaaaaacttcaaaaactcccatgaaattgttaaacgttagtcaattatcctcctccgtttgtttt 6733141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 41589267 - 41589313
Alignment:
Q  383 aattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||| |||||||||| |||||||||||||| |||| |||||||||||    
T  41589267 aattatcaaacgttagtcaattaccccctctgtttgttttggctgtt 41589313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 26741 - 26815
Alignment:
Q  355 ttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    ||||| ||||||||||||| || ||||||||||||||||||||  ||| |||| | |||||||||||||||||||    
T  26741 ttttaagaaacttcaaaaatcttcctgaaattgtcaaacgttagacaactaccacatccgtttattttggctgtt 26815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 27477 - 27406
Alignment:
Q  356 tttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttattttggctgtt 429  Q
    |||| ||||||| ||||||||| |  ||||||||||||| || ||||||||||||||||||| |||||||||||    
T  27477 tttaagaaacttaaaaaacctctc--aaattgtcaaacgatagtcaattaccccctccgtttgttttggctgtt 27406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 1997 - 2079
Alignment:
Q  347 cccctgatttttaggaaacttcaaaaacctccctgaaattgtcaaacgttaatcaatta-ccccctccgtttattttggctgtt 429  Q
    ||||||||||||   |||||||||||||| |||||||||||| |||||||| ||||||| |||||||||| | |||||||||||    
T  1997 cccctgatttttgcaaaacttcaaaaacc-ccctgaaattgttaaacgttagtcaattacccccctccgtctgttttggctgtt 2079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 7611 - 7550
Alignment:
Q  361 gaaacttcaaaaacctccctgaaattgtcaaacgttaatcaattaccccctccgtttatttt 422  Q
    ||||| |||||| |||||  |||||||||||| |||||| ||||||||||||||||| ||||    
T  7611 gaaacatcaaaaccctccgcgaaattgtcaaatgttaattaattaccccctccgtttgtttt 7550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University