View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13617_low_6 (Length: 375)
Name: NF13617_low_6
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13617_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 16704231 - 16703950
Alignment:
| Q |
12 |
aagaaaataaaaacattacacaacgaaagtttacatcaaccgaacagatgtaaaaaagataaagtggaatttttaaaaatgtaggttagaattttgtatt |
111 |
Q |
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| T |
16704231 |
aagaaaataaaaacattgcacaacgaaagtttacatcaaccgagcagatgtaaaaaagataaagtggaatttttaaaaatgtaggttagaattttgtatt |
16704132 |
T |
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| Q |
112 |
ggtgaaactcgtatttccaactctttaaggtttgttttaattgttattttggtccttttgttaagtttttaggatctctttactactatttgctt-gttt |
210 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
16704131 |
ggtgaaactcgtatttctaactctttaaggtttgttttaattgttattttggtccttttgttaagtttttaggatctcttcactactatttgcttggttt |
16704032 |
T |
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| Q |
211 |
ttcattattagcaattatcatggagccaaagtgaagatttagagctaaaagagatgtattcaagccttacaatatgtgcctt |
292 |
Q |
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| T |
16704031 |
ttcattattagcaatgatcatggagccaaagtgaagattttgagctaaaagagatgtattcaagccttacaatatgtgcctt |
16703950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 16703901 - 16703834
Alignment:
| Q |
291 |
ttactacgttaaacaacaaagattacgttcacccgtaacttggggttacggctgtaatctcacatttt |
358 |
Q |
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| T |
16703901 |
ttactacgttaaacaacaaggattacgttcacccgtaacttggggttacggctgtaatctcacatttt |
16703834 |
T |
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