View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13617_low_7 (Length: 299)

Name: NF13617_low_7
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13617_low_7
NF13617_low_7
[»] chr8 (6 HSPs)
chr8 (1-292)||(14791142-14791432)
chr8 (70-292)||(20111722-20111939)
chr8 (1-50)||(20111654-20111704)
chr8 (70-109)||(20112140-20112179)
chr8 (1-47)||(20112203-20112250)
chr8 (1-35)||(14790834-14790868)
[»] chr3 (15 HSPs)
chr3 (1-292)||(54560498-54560788)
chr3 (1-292)||(47471165-47471453)
chr3 (70-292)||(50837688-50837912)
chr3 (1-50)||(50837620-50837670)
chr3 (1-50)||(1576647-1576697)
chr3 (1-47)||(35942263-35942310)
chr3 (1-47)||(35942718-35942765)
chr3 (1-47)||(43546526-43546573)
chr3 (1-47)||(47470855-47470902)
chr3 (70-109)||(47470925-47470964)
chr3 (1-35)||(50838199-50838233)
chr3 (72-109)||(50838122-50838159)
chr3 (70-106)||(35942660-35942696)
chr3 (1-35)||(54560195-54560229)
chr3 (70-106)||(35942333-35942369)
[»] chr2 (9 HSPs)
chr2 (1-292)||(4593084-4593374)
chr2 (1-292)||(10256169-10256461)
chr2 (70-106)||(33003114-33003150)
chr2 (1-47)||(10255830-10255877)
chr2 (70-109)||(10255900-10255939)
chr2 (1-35)||(4592789-4592823)
chr2 (1-35)||(22539055-22539089)
chr2 (70-109)||(33003594-33003633)
chr2 (1-32)||(33003671-33003702)
[»] chr5 (17 HSPs)
chr5 (1-292)||(5348188-5348477)
chr5 (1-292)||(36429754-36430043)
chr5 (184-292)||(26380164-26380278)
chr5 (1-47)||(29500643-29500690)
chr5 (1-47)||(31808439-31808486)
chr5 (1-47)||(36429443-36429490)
chr5 (1-47)||(36681775-36681822)
chr5 (1-35)||(5347885-5347919)
chr5 (70-103)||(29500239-29500272)
chr5 (70-106)||(7491478-7491514)
chr5 (70-106)||(29500584-29500620)
chr5 (70-106)||(31808509-31808545)
chr5 (70-102)||(36429513-36429545)
chr5 (1-47)||(7491409-7491456)
chr5 (75-108)||(933835-933868)
chr5 (70-99)||(36681722-36681751)
chr5 (70-106)||(14278564-14278600)
[»] chr6 (12 HSPs)
chr6 (70-292)||(17732246-17732469)
chr6 (1-292)||(30709965-30710256)
chr6 (92-292)||(15347897-15348098)
chr6 (1-292)||(6008798-6009088)
chr6 (1-50)||(17732177-17732227)
chr6 (1-50)||(15348124-15348174)
chr6 (70-109)||(17732681-17732720)
chr6 (1-47)||(30709650-30709697)
chr6 (1-35)||(6009368-6009402)
chr6 (70-107)||(6009295-6009332)
chr6 (1-35)||(15347594-15347628)
chr6 (1-35)||(17732756-17732790)
[»] scaffold0102 (4 HSPs)
scaffold0102 (70-292)||(32824-33047)
scaffold0102 (1-47)||(32513-32560)
scaffold0102 (70-109)||(32583-32622)
scaffold0102 (1-50)||(33067-33117)
[»] chr4 (16 HSPs)
chr4 (1-292)||(27455392-27455682)
chr4 (70-273)||(49681488-49681691)
chr4 (1-50)||(49681419-49681469)
chr4 (1-50)||(621459-621509)
chr4 (70-106)||(21224481-21224517)
chr4 (70-109)||(27455149-27455188)
chr4 (1-35)||(21225961-21225995)
chr4 (1-35)||(21226475-21226509)
chr4 (1-35)||(27455078-27455112)
chr4 (1-35)||(49681973-49682007)
chr4 (70-103)||(21225014-21225047)
chr4 (70-103)||(21226405-21226438)
chr4 (70-107)||(49681900-49681937)
chr4 (1-35)||(21224408-21224442)
chr4 (70-104)||(21226032-21226066)
chr4 (8-37)||(21225081-21225110)
[»] chr7 (6 HSPs)
chr7 (1-285)||(36067794-36068079)
chr7 (70-109)||(3987104-3987143)
chr7 (1-47)||(3987169-3987216)
chr7 (70-102)||(30480579-30480611)
chr7 (1-47)||(36067455-36067502)
chr7 (70-103)||(36067525-36067558)
[»] chr1 (12 HSPs)
chr1 (70-292)||(47445212-47445435)
chr1 (70-109)||(36475511-36475550)
chr1 (5-50)||(47445147-47445193)
chr1 (70-106)||(27585864-27585900)
chr1 (70-106)||(36475842-36475878)
chr1 (1-47)||(36475442-36475489)
chr1 (1-47)||(47445702-47445749)
chr1 (1-35)||(27585460-27585494)
chr1 (70-107)||(47445642-47445679)
chr1 (70-106)||(27585529-27585565)
chr1 (1-47)||(27585924-27585971)
chr1 (1-47)||(36475901-36475948)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 14791432 - 14791142
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||||||||    
T  14791432 tttcttcatcttcttccttgcacttttttcatcatcttcatgaatatttataaaaaaatccagaaaaaaattaagaaacaacaaccattaacaacatcat 14791333  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatcattg 198  Q
    |||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14791332 catcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatcattg 14791236  T
Q  199 ttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14791235 ttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 14791142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 20111722 - 20111939
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    ||||||||||||||| ||||||||||||||||||      || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  20111722 ttaagaaacaacaacgattaacaacatcatcatc------tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtggcagaa 20111815  T
Q  170 agatcaagaga-aattgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattct 268  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |    
T  20111816 agatcaagagacaattgatgatgatcattgttgttggtaatctcatcgctgctccaaaaagaaaatccatttgaatgagggttaaaaagtgattgatttt 20111915  T
Q  269 gaagaggagacatgagtgatgatg 292  Q
    ||||| ||||||||||||||||||    
T  20111916 gaagatgagacatgagtgatgatg 20111939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20111654 - 20111704
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20111654 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 20111704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 20112179 - 20112140
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  20112179 ttaagaaacaacaaccattaacaacatcatcatcaacatc 20112140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20112250 - 20112203
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  20112250 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 20112203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14790834 - 14790868
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14790834 tttcttcatcttcttccttccacttttttcatcat 14790868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 54560788 - 54560498
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||||||||    
T  54560788 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttataaaaaaatccagaaaaaaattaagaaacaacaaccattaacaacatcat 54560689  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatcattg 198  Q
    |||||||   || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54560688 catcatc---tcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatcattg 54560592  T
Q  199 ttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54560591 ttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattatgaagaggagacatgagtgatgatg 54560498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 47471453 - 47471165
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   |||||||||||||||||||||      |||    
T  47471453 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat--aaaaaatccagaaaaaattaagaaacaacaaccattaa------cat 47471362  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  47471361 catcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 47471262  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47471261 ttgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 47471165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 50837688 - 50837912
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    ||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50837688 ttaagaaacaacaaccattaacaacatc---atcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 50837784  T
Q  170 agatcaagaga-aat---tgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatga-gggttaaaaagtgattga 264  Q
    ||||||||||| |||   |||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  50837785 agatcaagagacaattgatgatgatgatcagtgttgttgataatttcatcgctgctccaaaaaggaaatccatttgaatgaggggttaaaaagtgattga 50837884  T
Q  265 ttctgaagaggagacatgagtgatgatg 292  Q
    ||||||||||||||||||||||||||||    
T  50837885 ttctgaagaggagacatgagtgatgatg 50837912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50837620 - 50837670
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatca-tttcatgaatatttat 50  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50837620 tttcttcatcttcttccttccacttttttcatcattttcatgaatatttat 50837670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1576647 - 1576697
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1576647 tttcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 1576697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35942263 - 35942310
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  35942263 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 35942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35942765 - 35942718
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  35942765 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 35942718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43546526 - 43546573
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  43546526 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 43546573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47470855 - 47470902
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  47470855 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 47470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 47470925 - 47470964
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  47470925 ttaagaaacaacaaccattaacaacatcatcatcaacatc 47470964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50838233 - 50838199
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  50838233 tttcttcatcttcttccttccacttttttcatcat 50838199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 50838159 - 50838122
Alignment:
Q  72 aagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50838159 aagaaacaacaaccattaacaacaacatcatcatcatc 50838122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 35942696 - 35942660
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35942696 ttaagaaacaacaaccattaacaacatcaccatcatc 35942660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 54560195 - 54560229
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  54560195 tttcttcttcttcttccttccacttttttcatcat 54560229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 35942333 - 35942369
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  35942333 ttaagaagcaacaactattaacaacatcatcatcatc 35942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4593374 - 4593084
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||                   ||||||||||||||||||||||||||||||    
T  4593374 tttcttcatcttcttccttccacttttttcaccatcttcatgaatatttataaaaaaatccagaaaaaaattaagaaacaacaaccattaacaacatcat 4593275  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatcattg 198  Q
    |||||||   || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4593274 catcatc---tcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatcattg 4593178  T
Q  199 ttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4593177 ttgttgataatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattatgaagaggagacatgagtgatgatg 4593084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 10256461 - 10256169
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||   |||    
T  10256461 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat-aaaaaatccagaaaaaaattaagaaacaacaaccattaacaa---cat 10256366  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  10256365 catcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 10256266  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10256265 ttgttgttggtaatctcatcgctgctccaaaatggaaatccatttgaatgagggttagaaagtgattgattctcaagaggagacatgagtgatgatg 10256169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 33003114 - 33003150
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  33003114 ttaagaaacaacaaccattaacaacatcatcatcatc 33003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10255830 - 10255877
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  10255830 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 10255877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 10255900 - 10255939
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10255900 ttaagaaacaacaaccattaacaacatcatcatcaacatc 10255939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4592789 - 4592823
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4592789 tttcttcatcttcttccttccacttttttcatcat 4592823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22539089 - 22539055
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22539089 tttcttcatcttcttccttccacttttttcatcat 22539055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 33003633 - 33003594
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  33003633 ttaagaaacaacaatcattatcaacatcatcatcatcatc 33003594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33003702 - 33003671
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  33003702 tttcttcatcttcttccttccacttttttcat 33003671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5348477 - 5348188
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||   |||    
T  5348477 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat-aaaaaaatccagaaaaaattaagaaacaacaaccattaacaa---cat 5348382  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatcattg 198  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5348381 catcatcatctcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatcattg 5348282  T
Q  199 ttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348281 ttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 5348188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 36430043 - 36429754
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   |||||||||| |||||||||||||   |||    
T  36430043 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat-aaaaaatccagaaaaaaattaagaaacagcaaccattaacaa---cat 36429948  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  36429947 catcatcatctcattactagcttctcttgtttgttgctca---ttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 36429851  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429850 ttgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 36429754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 26380278 - 26380164
Alignment:
Q  184 tgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaa------tgagggttaaaaagtgattgattctgaagaggag 277  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||      ||||||||||| | |||||||||||||||| |||    
T  26380278 tgatgatgatcattgttattgataatctcatcgctgctccaaaaaggaaacccatttgaatgagcctgagggttaaagattgattgattctgaagatgag 26380179  T
Q  278 acatgagtgatgatg 292  Q
    |||||||||||||||    
T  26380178 acatgagtgatgatg 26380164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29500690 - 29500643
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29500690 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 29500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31808439 - 31808486
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31808439 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 31808486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36429443 - 36429490
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36429443 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36429490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36681822 - 36681775
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36681822 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36681775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5347885 - 5347919
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5347885 tttcttcatcttcttccttccacttttttcatcat 5347919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 29500239 - 29500272
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatc 103  Q
    ||||||||||||||||||||||||||||||||||    
T  29500239 ttaagaaacaacaaccattaacaacatcatcatc 29500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 7491478 - 7491514
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7491478 ttaagaaacaataaccattaacaacatcatcatcatc 7491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 29500620 - 29500584
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29500620 ttaagaaataacaaccattaacaacatcatcatcatc 29500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 31808509 - 31808545
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31808509 ttaagatacaacaaccattaacaacatcatcatcatc 31808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 36429513 - 36429545
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcat 102  Q
    |||||||||||||||||||||||||||||||||    
T  36429513 ttaagaaacaacaaccattaacaacatcatcat 36429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7491409 - 7491456
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  7491409 tttcttcatcttcttccttccacctttttcatcatcttcatcaatatt 7491456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 933835 - 933868
Alignment:
Q  75 aaacaacaaccattaacaacatcatcatcatcat 108  Q
    ||||||||| ||||||||||||||||||||||||    
T  933835 aaacaacaatcattaacaacatcatcatcatcat 933868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 36681751 - 36681722
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||    
T  36681751 ttaagaaacaacaaccattaacaacatcat 36681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 14278600 - 14278564
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  14278600 ttaagaaacaacaatcatcaacaacatcatcatcatc 14278564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 17732246 - 17732469
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17732246 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 17732342  T
Q  170 agatcaagaga-aattgat---gatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 265  Q
    ||||||||||| |||||||   |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17732343 agatcaagagacaattgatgatgatgatcagtgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 17732442  T
Q  266 tctgaagaggagacatgagtgatgatg 292  Q
    |||||||||||||||||||||||||||    
T  17732443 tctgaagaggagacatgagtgatgatg 17732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 30710256 - 30709965
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||   |||    
T  30710256 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat--aaaaaatccagaaaaaattaagaaacaacaaccattaacaa---cat 30710162  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  30710161 catcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 30710062  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710061 ttgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 30709965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 92 - 292
Target Start/End: Complemental strand, 15348098 - 15347897
Alignment:
Q  92 aacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgat 190  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15348098 aacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgat 15347999  T
Q  191 gatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatga 290  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15347998 gatcattgttgttgataatctcatcgctgctccaaaatggaaatccatttgaatgagggttaaaaagtgattgattctaaagaggagacatgagtgatga 15347899  T
Q  291 tg 292  Q
    ||    
T  15347898 tg 15347897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 6008798 - 6009088
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   |||||||||||||||||||||||      |    
T  6008798 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttataaaaaatccagaaaaaaaattaagaaacaacaaccattaaca------t 6008891  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgat---gatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||   ||||||||    
T  6008892 catcatcatctcattactagcttctcttgtttgttgctcattattgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 6008991  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6008992 ttgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttcaaaagtgattgattctgaagaggagacatgagtgatgatg 6009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17732177 - 17732227
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatca-tttcatgaatatttat 50  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17732177 tttcttcatcttcttccttccacttttttcatcattttcatgaatatttat 17732227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15348174 - 15348124
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  15348174 tttcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 15348124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 17732720 - 17732681
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  17732720 ttaagaaacaacaaccattaacaacaacatcatcatcatc 17732681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30709650 - 30709697
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30709650 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 30709697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6009402 - 6009368
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6009402 tttcttcatcttcttccttccacttttttcatcat 6009368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 6009332 - 6009295
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatca 107  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6009332 ttaagaaacaacaaccattaacaacaacatcatcatca 6009295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15347594 - 15347628
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  15347594 tttcttcatcttcttcctttcacttttttcatcat 15347628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17732790 - 17732756
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  17732790 tttcttcatcttcttccttcgacttttttcatcat 17732756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 70 - 292
Target Start/End: Complemental strand, 33047 - 32824
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33047 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 32951  T
Q  170 agatcaagaga-aattgatgatgat---cattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 265  Q
    ||||||||||| |||||||||||||   ||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32950 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcactgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 32851  T
Q  266 tctgaagaggagacatgagtgatgatg 292  Q
    |||||| ||||||||||||||||||||    
T  32850 tctgaaaaggagacatgagtgatgatg 32824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32513 - 32560
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  32513 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 32560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 32583 - 32622
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  32583 ttaagaaacaacaaccattaacaacatcatcatcaacatc 32622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33117 - 33067
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  33117 tttctccatcttcttccttccactttttttatcatcttcatgaatatttat 33067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27455682 - 27455392
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||   |||    
T  27455682 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat---aaaaaatccagaaaaattaagaaacaacaaccattaacaa---cat 27455589  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  27455588 catcatcatctcattactaacttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 27455489  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 292  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27455488 ttgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgatttattctgaagaggagacatgagtgatgatg 27455392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 273
Target Start/End: Original strand, 49681488 - 49681691
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    |||||||||||||||||||||||||||||| ||||||   || ||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||    
T  49681488 ttaagaaacaacaaccattaacaacatcattatcatc---tcattactagcttctcttgtttgttgatcattgttgttatccaaaagggtcgtagc-taa 49681583  T
Q  170 agatcaagaga-aat---tgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 265  Q
    ||||  ||||| |||   ||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  49681584 agatatagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaacccatttgaatgagggttaaaaagtgattgat 49681683  T
Q  266 tctgaaga 273  Q
    ||| ||||    
T  49681684 tctaaaga 49681691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49681419 - 49681469
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49681419 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 49681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 621509 - 621459
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  621509 tttcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 621459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 21224481 - 21224517
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  21224481 ttaagaaacaacaaccattaacaacatcatcatcatc 21224517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 27455149 - 27455188
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27455149 ttaagaaacaacaaccattaacaacatcatcatcaacatc 27455188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21225961 - 21225995
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21225961 tttcttcatcttcttccttccacttttttcatcat 21225995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21226509 - 21226475
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21226509 tttcttcatcttcttccttccacttttttcatcat 21226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27455078 - 27455112
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27455078 tttcttcatcttcttccttccacttttttcatcat 27455112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49682007 - 49681973
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49682007 tttcttcatcttcttccttccacttttttcatcat 49681973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 21225047 - 21225014
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatc 103  Q
    ||||||||||||||||||||||||||||||||||    
T  21225047 ttaagaaacaacaaccattaacaacatcatcatc 21225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 21226438 - 21226405
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatc 103  Q
    ||||||||||||||||||||||||||||||||||    
T  21226438 ttaagaaacaacaaccattaacaacatcatcatc 21226405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 49681937 - 49681900
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatca 107  Q
    |||||||||||||||||||||||||| |||||||||||    
T  49681937 ttaagaaacaacaaccattaacaacaacatcatcatca 49681900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21224408 - 21224442
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  21224408 tttcttcatattcttccttccacttttttcatcat 21224442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 21226032 - 21226066
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatca 104  Q
    ||||||||||||||||||||| |||||||||||||    
T  21226032 ttaagaaacaacaaccattaaaaacatcatcatca 21226066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 21225110 - 21225081
Alignment:
Q  8 atcttcttccttccacttttttcatcattt 37  Q
    ||||||||||||||||||||||||||||||    
T  21225110 atcttcttccttccacttttttcatcattt 21225081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 36068079 - 36067794
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcat 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||   |||    
T  36068079 tttcttcatcttcttccttccacttttttcatcatcttcatgaatatttat-aaaaaatccagaaaaaaattaagaaacaacaaccattaacaa---cat 36067984  T
Q  100 catcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aat---tgatgatgatca 195  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  36067983 catcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatca 36067884  T
Q  196 ttgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagt 285  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  36067883 ttgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagagttaaaaagtgattgattttgaagaggagacatgagt 36067794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 3987143 - 3987104
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3987143 ttaagaaacaacaaccattaacaatatcatcatcatcatc 3987104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3987216 - 3987169
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  3987216 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 3987169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 30480611 - 30480579
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcat 102  Q
    |||||||||||||||||||||||||||||||||    
T  30480611 ttaagaaacaacaaccattaacaacatcatcat 30480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36067455 - 36067502
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  36067455 tttctttatcttcttccttccacttttttcatcatcttcatcaatatt 36067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 36067525 - 36067558
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatc 103  Q
    |||||||||||||||||||||||||| |||||||    
T  36067525 ttaagaaacaacaaccattaacaacaacatcatc 36067558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 70 - 292
Target Start/End: Original strand, 47445212 - 47445435
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 169  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  47445212 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttattcaaaagggtcgtagcagaa 47445308  T
Q  170 agatcaagaga-aatt---gatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 265  Q
    ||||||||||| ||||   |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47445309 agatcaagagacaatttatgatgatgatcattgttgttggtaatctcatcgttgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 47445408  T
Q  266 tctgaagaggagacatgagtgatgatg 292  Q
    ||||||||||||||||||||| |||||    
T  47445409 tctgaagaggagacatgagtggtgatg 47445435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 36475511 - 36475550
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatcatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36475511 ttaagaaacaacaaccattaacaacatcatcatcatcatc 36475550  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 47445147 - 47445193
Alignment:
Q  5 ttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 50  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  47445147 ttcatcttcttccttccacttttttcatcatcttcatgaatatttat 47445193  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 27585900 - 27585864
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  27585900 ttaagaaacaacaaccattaacaacatcatcatcatc 27585864  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 36475878 - 36475842
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  36475878 ttaagaaacaacaaccattaacaacatcatcatcatc 36475842  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36475442 - 36475489
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36475442 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36475489  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47445749 - 47445702
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  47445749 tttcttcatcttcttccttccacttttttcatcatcttcatcaatatt 47445702  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27585460 - 27585494
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27585460 tttcttcatcttcttccttccacttttttcatcat 27585494  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 47445679 - 47445642
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatca 107  Q
    |||||||||||||||||||||||||| |||||||||||    
T  47445679 ttaagaaacaacaaccattaacaacaacatcatcatca 47445642  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 27585529 - 27585565
Alignment:
Q  70 ttaagaaacaacaaccattaacaacatcatcatcatc 106  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27585529 ttaagaaacaataaccattaacaacatcatcatcatc 27585565  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27585971 - 27585924
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  27585971 tttcttaatcttcttccttccacttttttcatcatcttcatcaatatt 27585924  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36475948 - 36475901
Alignment:
Q  1 tttcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 47  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  36475948 tttcttcatcttcttccttccacttttttcgtcatcttcatcaatatt 36475901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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