View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13617_low_9 (Length: 250)

Name: NF13617_low_9
Description: NF13617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13617_low_9
NF13617_low_9
[»] chr1 (8 HSPs)
chr1 (19-216)||(10011839-10012036)
chr1 (168-220)||(40981614-40981666)
chr1 (168-221)||(29836238-29836291)
chr1 (180-220)||(50860118-50860158)
chr1 (175-220)||(45118526-45118571)
chr1 (22-74)||(39076149-39076201)
chr1 (168-220)||(50290433-50290485)
chr1 (181-220)||(39076255-39076294)
[»] chr2 (6 HSPs)
chr2 (167-220)||(26449093-26449146)
chr2 (170-221)||(31409726-31409777)
chr2 (139-220)||(4768478-4768559)
chr2 (175-221)||(2985463-2985509)
chr2 (182-215)||(1556305-1556338)
chr2 (165-220)||(22145661-22145716)
[»] chr7 (5 HSPs)
chr7 (128-220)||(13761781-13761872)
chr7 (168-222)||(1971090-1971144)
chr7 (165-220)||(24759474-24759529)
chr7 (168-220)||(43903420-43903472)
chr7 (23-74)||(13761887-13761938)
[»] chr3 (10 HSPs)
chr3 (165-221)||(52126884-52126940)
chr3 (168-222)||(29129128-29129182)
chr3 (168-215)||(53689246-53689293)
chr3 (168-220)||(25612614-25612666)
chr3 (180-220)||(45458526-45458566)
chr3 (180-223)||(44712575-44712618)
chr3 (168-214)||(14459268-14459314)
chr3 (176-221)||(49826481-49826526)
chr3 (180-220)||(19009684-19009724)
chr3 (180-220)||(43399450-43399490)
[»] chr8 (6 HSPs)
chr8 (165-220)||(38681137-38681192)
chr8 (166-220)||(26955412-26955466)
chr8 (148-220)||(13863812-13863885)
chr8 (165-222)||(42313951-42314008)
chr8 (165-211)||(38682400-38682445)
chr8 (180-217)||(16358287-16358324)
[»] chr5 (6 HSPs)
chr5 (165-220)||(4077838-4077893)
chr5 (166-221)||(40946709-40946764)
chr5 (165-215)||(16352147-16352197)
chr5 (168-221)||(30463749-30463802)
chr5 (180-215)||(40162224-40162259)
chr5 (180-222)||(33553598-33553640)
[»] chr4 (18 HSPs)
chr4 (170-221)||(14210441-14210492)
chr4 (170-221)||(14211410-14211461)
chr4 (170-221)||(14212361-14212412)
chr4 (170-221)||(14213330-14213381)
chr4 (170-221)||(14214298-14214349)
chr4 (170-221)||(14215267-14215318)
chr4 (170-221)||(14218138-14218189)
chr4 (170-221)||(14219108-14219159)
chr4 (170-221)||(14220077-14220128)
chr4 (170-221)||(14221028-14221079)
chr4 (170-221)||(14221997-14222048)
chr4 (170-221)||(14222966-14223017)
chr4 (170-221)||(14209490-14209541)
chr4 (170-221)||(14216236-14216287)
chr4 (170-221)||(14217187-14217238)
chr4 (178-217)||(37619002-37619041)
chr4 (172-220)||(1678473-1678521)
chr4 (168-221)||(14586858-14586911)
[»] chr6 (7 HSPs)
chr6 (180-217)||(8840653-8840690)
chr6 (165-221)||(23073454-23073510)
chr6 (168-221)||(25357568-25357621)
chr6 (176-217)||(2319907-2319948)
chr6 (165-222)||(18645948-18646005)
chr6 (149-216)||(20910682-20910750)
chr6 (149-216)||(20925130-20925198)
[»] scaffold0005 (1 HSPs)
scaffold0005 (168-221)||(230463-230516)
[»] scaffold1095 (1 HSPs)
scaffold1095 (166-220)||(553-607)
[»] scaffold0036 (1 HSPs)
scaffold0036 (180-220)||(97737-97777)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 10011839 - 10012036
Alignment:
Q  19 atagtgtacctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagacacttcattcaattaattaagga 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10011839 atagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagatacttcattcaattaattaagga 10011938  T
Q  119 gggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctaggattagatataaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10011939 gggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctaggattaaatataaa 10012036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 40981614 - 40981666
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  40981614 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 40981666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 29836291 - 29836238
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaaggatt 29836238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 50860158 - 50860118
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  50860158 aattagggtaagcacgtttgctaggattagatataaaggat 50860118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 45118526 - 45118571
Alignment:
Q  175 tttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||    
T  45118526 tttggaattagggtaagcatgtttgcaaccattagatataaaggat 45118571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 39076149 - 39076201
Alignment:
Q  22 gtgtacctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct 74  Q
    |||||||||||||||||||||| | ||| | |||||||||||||| |||||||    
T  39076149 gtgtacctaggtgcatggaaaacaaaccaacataaattctgagtgagaaggct 39076201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 50290485 - 50290433
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||| | | ||||| |||||||||||| ||||||||||||||||||||    
T  50290485 ttagggtttggaatttaggttaagcatgtttgttaggattagatataaaggat 50290433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 39076255 - 39076294
Alignment:
Q  181 attagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  39076255 attagggtttgcatgtttgctaggattagatataaaggat 39076294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 26449146 - 26449093
Alignment:
Q  167 attagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagatataaaggat 26449093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 31409726 - 31409777
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  31409726 agggtttggaaattagggtaagcatgtttgctaggattatatataaaggatt 31409777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 4768559 - 4768478
Alignment:
Q  139 tttaaattatttggagccattttgtt-ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||| |||||||||||||| || || |||||||||   ||||||| ||||||||||||||| |||||||||||||||||    
T  4768559 tttaaatt-tttggagccatttttttaggtttagggtttgacaattaggataagcatgtttgctaagattagatataaaggat 4768478  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 2985509 - 2985463
Alignment:
Q  175 tttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||    
T  2985509 tttggaattagggtaagcatgtttgcaaccattagatataaaggatt 2985463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 1556338 - 1556305
Alignment:
Q  182 ttagggtaagcatgtttgctaggattagatataa 215  Q
    ||||||||||||||||||||||||||||||||||    
T  1556338 ttagggtaagcatgtttgctaggattagatataa 1556305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 22145661 - 22145716
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||  | |||||||||||||||   |||||||||||||||||||||||    
T  22145661 ggattagggttaggaaattagggtaagcattactgctaggattagatataaaggat 22145716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 13761872 - 13761781
Alignment:
Q  128 tgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||| ||||| ||||| |||| ||||||||| | |||||||| || || |||||||||  ||||||||||||||||||||||||||||||    
T  13761872 tgatttctaaattcaaatt-tttgaagccattttttaggattaggtttatgcaattagggtttgcatgtttgctaggattagatataaaggat 13761781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 1971144 - 1971090
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggattt 222  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  1971144 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaatgattt 1971090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 24759529 - 24759474
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||  | ||||||||||| |||||||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagatataaaggat 24759474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 43903472 - 43903420
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||||| |||||||||| ||||||||||||  ||||||||||||||||    
T  43903472 ttagggttttgcaattagggtaggcatgtttgctaacattagatataaaggat 43903420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 13761938 - 13761887
Alignment:
Q  23 tgtacctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct 74  Q
    |||||||||||||||||||||   ||| | ||||||||||||||||||||||    
T  13761938 tgtacctaggtgcatggaaaaccgaccaatataaattctgagtgggaaggct 13761887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 52126940 - 52126884
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  52126940 ggattagggttaagaaattagggtaagcatgtttgctaggattagatataaaggatt 52126884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 29129182 - 29129128
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggattt 222  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaaggattt 29129128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 53689293 - 53689246
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataa 215  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  53689293 ttagggtttggcaattagggtaagcatgtttgctaggattaaatataa 53689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 25612666 - 25612614
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||  ||||||||||||||||||||||| |  ||||||||||||||||    
T  25612666 ttagggttagggaattagggtaagcatgtttgcaaccattagatataaaggat 25612614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 45458526 - 45458566
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  45458526 aattagggtaagcatgtttactaggatcagatataaaggat 45458566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 44712575 - 44712618
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggatttg 223  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  44712575 aattaggataaacatgtttgctaggattatatataaaggatttg 44712618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 14459268 - 14459314
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatata 214  Q
    ||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  14459268 ttagggtttggaaattaggttaagcatgtttgctaggattatatata 14459314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 49826481 - 49826526
Alignment:
Q  176 ttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    |||||| ||| |||| |||||||| |||||||||||||||||||||    
T  49826481 ttggaactagagtaaacatgtttgttaggattagatataaaggatt 49826526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 19009684 - 19009724
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||  || |||||||||||||||||||||||||||    
T  19009684 aattagggtttgcttgtttgctaggattagatataaaggat 19009724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 43399490 - 43399450
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  43399490 aattagggtaagcattactgctaggattagatataaaggat 43399450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 38681192 - 38681137
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||    
T  38681192 ggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaaggat 38681137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 26955466 - 26955412
Alignment:
Q  166 gattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    ||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagatataaaggat 26955412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 13863812 - 13863885
Alignment:
Q  148 tttggagccattttgtt-ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||| ||| || || |||||||| ||||||||||||  | |||||| |||||||||||||||||||||    
T  13863812 tttggagccaattttttaggtttagggttatggaattagggtttgtatgtttcctaggattagatataaaggat 13863885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 42313951 - 42314008
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggattt 222  Q
    |||||||||||  | |||||||||  |||||||||| |||||||||||||||||||||    
T  42313951 ggattagggttaggcaattagggtttgcatgtttgccaggattagatataaaggattt 42314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 38682445 - 38682400
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagat 211  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||    
T  38682445 ggattagggtttagcaat-agggtaagcatgtttgctaggattagat 38682400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 16358324 - 16358287
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaag 217  Q
    |||||||||  |||||||||||||||||||||||||||    
T  16358324 aattagggtttgcatgtttgctaggattagatataaag 16358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 4077893 - 4077838
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagatataaaggat 4077838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 40946764 - 40946709
Alignment:
Q  166 gattagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagatataaaggatt 40946709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 16352147 - 16352197
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataa 215  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 30463802 - 30463749
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  30463802 ttaggattgtggaattagggtttgcatgtttgctaggattagatataaaggatt 30463749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 40162259 - 40162224
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataa 215  Q
    |||||||||||||||||||| |||||||||||||||    
T  40162259 aattagggtaagcatgtttgttaggattagatataa 40162224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 33553640 - 33553598
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggattt 222  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||    
T  33553640 aattaggataagcatatttgctaggattagatataaaagattt 33553598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14210441 - 14210492
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14210441 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14210492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14211410 - 14211461
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14211410 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14212361 - 14212412
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14212361 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14212412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14213330 - 14213381
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14213330 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14213381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14214298 - 14214349
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14214298 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14214349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14215267 - 14215318
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14215267 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14215318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14218138 - 14218189
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14218138 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14218189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14219108 - 14219159
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14219108 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14220077 - 14220128
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14220077 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14220128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14221028 - 14221079
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14221028 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14221079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14221997 - 14222048
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14221997 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14222048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14222966 - 14223017
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14222966 agggtttggaaattagggtaagcatgtttgctaggattagatataaaggatt 14223017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14209490 - 14209541
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  14209490 agggtttggaaattagggtaagcatgtttgctacgattagatataaaggatt 14209541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14216236 - 14216287
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  14216236 agggtttggaaattagggtaagcatgtttgctaggattatatataaaggatt 14216287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 14217187 - 14217238
Alignment:
Q  170 agggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  14217187 agggtttggaaattagggtaagcatgtttgctacgattagatataaaggatt 14217238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 37619002 - 37619041
Alignment:
Q  178 ggaattagggtaagcatgtttgctaggattagatataaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37619002 ggaattagggtaagcatgtttgctaggattagatataaag 37619041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 1678473 - 1678521
Alignment:
Q  172 ggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  1678473 ggttgtggaattagggtttgcatgtttgctaggattagatataaaggat 1678521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 14586858 - 14586911
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    |||||||| || ||||||| |  |||||||||||||||||||||||||||||||    
T  14586858 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaaggatt 14586911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 8840690 - 8840653
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaag 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8840690 aattagggtaagcatgtttgctaggattagatataaag 8840653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 23073454 - 23073510
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||||||||   ||||||||||||||||||||| ||||||||||||||| ||||    
T  23073454 ggattagggtttgacaattagggtaagcatgtttgcaaggattagatataaaagatt 23073510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 25357568 - 25357621
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    ||||||||| | ||||||||||||||||||||| |  |||||||||||||||||    
T  25357568 ttagggtttggtaattagggtaagcatgtttgcaaccattagatataaaggatt 25357621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 2319948 - 2319907
Alignment:
Q  176 ttggaattagggtaagcatgtttgctaggattagatataaag 217  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  2319948 ttggaattagggtaaacatatttgttaggattagatataaag 2319907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 18646005 - 18645948
Alignment:
Q  165 ggattagggttttggaattagggtaagcatgtttgctaggattagatataaaggattt 222  Q
    |||||||||||  | ||||||||||| |||   |||||||||||||||||||||||||    
T  18646005 ggattagggttaagaaattagggtaaacattactgctaggattagatataaaggattt 18645948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 20910682 - 20910750
Alignment:
Q  149 ttggagccattttgtt-ggattagggttttggaattagggtaagcatgtttgctaggattagatataaa 216  Q
    ||||||||||||| || |||||||||||  | ||| | |||  ||||||||||||||||||||||||||    
T  20910682 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattagatataaa 20910750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 20925130 - 20925198
Alignment:
Q  149 ttggagccattttgtt-ggattagggttttggaattagggtaagcatgtttgctaggattagatataaa 216  Q
    ||||||||||||| || |||||||||||  | ||| | |||  ||||||||||||||||||||||||||    
T  20925130 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattagatataaa 20925198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 230516 - 230463
Alignment:
Q  168 ttagggttttggaattagggtaagcatgtttgctaggattagatataaaggatt 221  Q
    |||||||| || ||||||| |  |||||||||||||||||||||||||||||||    
T  230516 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaaggatt 230463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 553 - 607
Alignment:
Q  166 gattagggttttggaattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||| |  |||||||||  |||||||||||||||||| |||||||||||    
T  553 gattagggttatacaattagggtttgcatgtttgctaggattaaatataaaggat 607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 97777 - 97737
Alignment:
Q  180 aattagggtaagcatgtttgctaggattagatataaaggat 220  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  97777 aattagggtttgcatgtttgttaggattagatataaaggat 97737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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