View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13618_high_1 (Length: 540)

Name: NF13618_high_1
Description: NF13618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13618_high_1
NF13618_high_1
[»] scaffold0157 (1 HSPs)
scaffold0157 (18-520)||(34986-35488)
[»] chr4 (8 HSPs)
chr4 (18-520)||(12484989-12485491)
chr4 (54-520)||(12468865-12469331)
chr4 (54-520)||(12466226-12466687)
chr4 (152-390)||(6410151-6410395)
chr4 (303-369)||(38093658-38093724)
chr4 (93-152)||(47518421-47518480)
chr4 (303-363)||(55729142-55729202)
chr4 (102-172)||(23054177-23054254)
[»] chr2 (3 HSPs)
chr2 (300-390)||(38530932-38531022)
chr2 (96-149)||(1551571-1551624)
chr2 (96-172)||(17281887-17281970)
[»] chr1 (3 HSPs)
chr1 (301-369)||(32058960-32059028)
chr1 (96-152)||(34118068-34118124)
chr1 (96-182)||(11407917-11408011)
[»] chr6 (2 HSPs)
chr6 (300-389)||(30845854-30845943)
chr6 (96-152)||(21881563-21881619)
[»] scaffold0044 (1 HSPs)
scaffold0044 (303-390)||(42449-42536)
[»] chr8 (2 HSPs)
chr8 (298-384)||(6444347-6444433)
chr8 (96-152)||(10408921-10408977)
[»] chr5 (3 HSPs)
chr5 (100-152)||(27170059-27170111)
chr5 (96-152)||(18697029-18697085)
chr5 (304-398)||(12156806-12156900)


Alignment Details
Target: scaffold0157 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 34986 - 35488
Alignment:
Q  18 caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt 117  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986 caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt 35085  T
Q  118 ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  35086 ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccatt 35185  T
Q  218 agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||| |||    
T  35186 agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccaccgccaaaaaccgtgttgcaggaccatcgacaaata 35285  T
Q  318 tggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcga 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||    
T  35286 tggaggtaggtggtgcagagggctcaagctgctcgtcgcaccaccataaacgacgtccaaatcttaagaagattcattggattttggatggcggtggcga 35385  T
Q  418 attttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcg 517  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35386 gttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcg 35485  T
Q  518 tgt 520  Q
    |||    
T  35486 tgt 35488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 12485491 - 12484989
Alignment:
Q  18 caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt 117  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12485491 caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt 12485392  T
Q  118 ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  12485391 ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccatt 12485292  T
Q  218 agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||| |||    
T  12485291 agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccaccgccaaaaaccgtgttgcaggaccatcgacaaata 12485192  T
Q  318 tggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcga 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||    
T  12485191 tggaggtaggtggtgcagagggctcaagctgctcgtcgcaccaccataaacgacgtccaaatcttaagaagattcattggattttggatggcggtggcga 12485092  T
Q  418 attttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcg 517  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12485091 gttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcg 12484992  T
Q  518 tgt 520  Q
    |||    
T  12484991 tgt 12484989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 54 - 520
Target Start/End: Complemental strand, 12469331 - 12468865
Alignment:
Q  54 catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca 153  Q
    ||||| ||||||  ||||||||||||  |||| |||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||| |||||||    
T  12469331 catatacgaacattgatttggtatcaccaatcgtgacatattcatcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctca 12469232  T
Q  154 ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca 253  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||||||  |||||| |||||| ||||||||||   |   |||||||||||||||||| |    
T  12469231 ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaataacccaagaaacaaagccgcaacata 12469132  T
Q  254 tattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgt 353  Q
    ||||| || |||||||||| |||||||||  | | ||| |    |||||||| |||| || |||||||||||||||||||||||||| |||| ||||| |    
T  12469131 tattatgatcccactagagctcgaaccaccgcaacaaaccgccgtgcaggactatcgtcaaatatggaggtaggtggtgcagagggctcaagatgctcat 12469032  T
Q  354 cgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgct 453  Q
    ||||||||||||||||||||  ||||||||| |||||  |||||| | ||| ||| |||||||| ||||||||||||||| | ||   ||||||||||||    
T  12469031 cgcaccaccataaacgacgtttacatcttaagaagatgtattggattctgggtggcggtggcgagttttgtgtagagagatggcagagaaaagagacgct 12468932  T
Q  454 aaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgt 520  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12468931 aaaagtaagggtatttgaagatccaacaacaccaaccttcttctcagggcaaatatggggatggtgt 12468865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 54 - 520
Target Start/End: Complemental strand, 12466687 - 12466226
Alignment:
Q  54 catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca 153  Q
    ||||| ||||||  ||||||||||||  |||| |||||||| ||||||||||||||||||  ||||||||| || ||| ||||||||||||| |||||||    
T  12466687 catatacgaacattgatttggtatcaccaatcgtgacatat-catcaccaccatcgtgaccagtccatcacaacccacattgcgagaaaacaaaacctca 12466589  T
Q  154 ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca 253  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||||||  |||||| |||||| ||||||||||   | ||||||||||||| ||||||||    
T  12466588 ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaacaaccagagaaacaaagctgcaacaca 12466489  T
Q  254 tattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgt 353  Q
    |||||| | |||| ||||| |||||||||  | ||||| |    || ||||| || | || |||||||||||||||||||||||||| |||| ||||| |    
T  12466488 tattacaatcccattagagctcgaaccaccgcaaaaaaccgccgtgtaggactattgtcaaatatggaggtaggtggtgcagagggctcaagatgctcat 12466389  T
Q  354 cgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgct 453  Q
    | ||||||||||||||||||| |||||||   |||||  |||||| |  || |||||||||||| ||||||||||||||| | ||   ||||||||||||    
T  12466388 cacaccaccataaacgacgtctacatctt---aagatgtattggattccgggtggtggtggcgagttttgtgtagagagatggcagagaaaagagacgct 12466292  T
Q  454 aaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgt 520  Q
    ||||||||| ||| ||||||||||| |||||||||| || || |||| |||||||||||||| ||||    
T  12466291 aaaagtaagggtatttgaagatccatcaacaccaacatt-ttttcagggcaaatatggggatggtgt 12466226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 152 - 390
Target Start/End: Original strand, 6410151 - 6410395
Alignment:
Q  152 caccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaaca 251  Q
    ||||||||||||||   |||||  ||||| |  ||||||||||||| ||| |||| |||||||| ||| |||||| ||| ||||||||| ||| ||||||    
T  6410151 caccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-gacgaaaaatcaggccatcagagttgaacggccagagaaacagagctgcaaca 6410249  T
Q  252 catattacgaccccactagaggtcga--------accacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggccca 343  Q
    ||  | |||||||||| |||||||||        |||||  ||||||     || ||||||||||| ||| || |||||||||||| ||| |||||| ||    
T  6410250 caattcacgaccccacaagaggtcgaccgctggaaccaccgccaaaaccgccgt-gcaggaccatcaacatatttggaggtaggtgatgcggagggcaca 6410348  T
Q  344 agctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat 390  Q
    ||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  6410349 agccgctcgtcgcaccaccataaacgacgtctacatcttaagaagat 6410395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 38093658 - 38093724
Alignment:
Q  303 gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacg 369  Q
    |||||||| ||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  38093658 gaccatcggcagatctggaggtaggtggtgcagagggcttaagccgctcgtcgcaccaccataaacg 38093724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 47518480 - 47518421
Alignment:
Q  93 attcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    ||||||||||||||| ||||||| |||||||||||  | |||||||| ||||||||||||    
T  47518480 attcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctc 47518421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 55729142 - 55729202
Alignment:
Q  303 gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccacca 363  Q
    |||||||| || || |||||||||||||||| ||||||  |||| ||||||||||||||||    
T  55729142 gaccatcggcatatctggaggtaggtggtgcggagggcttaagccgctcgtcgcaccacca 55729202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 23054254 - 23054177
Alignment:
Q  102 caccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 172  Q
    |||||||||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  23054254 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatc 23054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 38531022 - 38530932
Alignment:
Q  300 caggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat 390  Q
    |||||||||||||| || |||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||||||||| |||||    
T  38531022 caggaccatcgacatatctggaagtaggtggtgcggagggctcaagccgctcgtcgcaccaccataaacgacctctacatcttaagaagat 38530932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 1551624 - 1551571
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 149  Q
    |||||||||||||||||||| |||||||||||  | |||||||| |||||||||    
T  1551624 catcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataac 1551571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 17281970 - 17281887
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 172  Q
    |||||||||||| ||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  17281970 catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatc 17281887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 32058960 - 32059028
Alignment:
Q  301 aggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacg 369  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||| ||| ||||||||||||||||||    
T  32058960 aggaccatcgacagatctggaggtaggtggtgcggagggctcaagccgctggtcgcaccaccataaacg 32059028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 34118068 - 34118124
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    |||||||||||||||||| | |||||||||||  | |||||||| ||||||||||||    
T  34118068 catcaccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctc 34118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 11408011 - 11407917
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacct--------caccaagagagaaaacaaatctcatatcaac 182  Q
    |||||||||| ||||| | | |||||||||||| | |||||||| |||||||||||        |||||||||||||||||||| | ||||||||    
T  11408011 catcaccaccttcgtggccgatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaatatgatatcaac 11407917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 30845854 - 30845943
Alignment:
Q  300 caggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaaga 389  Q
    ||||||||||| || || |||||||||||||||| |||||  ||||| |||||||||||||||||||||| | || ||||||||| ||||    
T  30845854 caggaccatcggcaaatctggaggtaggtggtgcggagggttcaagccgctcgtcgcaccaccataaacggcctctacatcttaagaaga 30845943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 21881563 - 21881619
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    |||||||||||||||||| | |||||||||||    |||||||| ||||||||||||    
T  21881563 catcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctc 21881619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 42536 - 42449
Alignment:
Q  303 gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat 390  Q
    |||||||| ||||| |||||||||||||||| ||||||  |||| ||||||||||||||||||||| || || ||||| ||| |||||    
T  42536 gaccatcggcagatctggaggtaggtggtgcggagggcttaagccgctcgtcgcaccaccataaacaacctctacatcgtaagaagat 42449  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 6444347 - 6444433
Alignment:
Q  298 tgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaa 384  Q
    |||||||||||| |||||| ||||||||| || ||| |||| | ||||| ||||||| |||||||||||||||| || | |||||||    
T  6444347 tgcaggaccatccacagatctggaggtagctgatgcggaggacacaagccgctcgtcacaccaccataaacgacatctagatcttaa 6444433  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 10408921 - 10408977
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    |||||||||||||||||| | |||||||||||  | |||||||| ||||||||||||    
T  10408921 catcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctc 10408977  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 27170111 - 27170059
Alignment:
Q  100 accaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    |||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  27170111 accaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 27170059  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 18697029 - 18697085
Alignment:
Q  96 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 152  Q
    |||||||||||||||||||| |||||||||||  | |||||| | ||||||||||||    
T  18697029 catcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctc 18697085  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 12156806 - 12156900
Alignment:
Q  304 accatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattgga 398  Q
    ||||||| | ||| |||||||||||||||| || |||  |||| ||||||||||||||||  |||| | || ||||| ||| |||||| ||||||    
T  12156806 accatcggcggatctggaggtaggtggtgcggaaggcttaagccgctcgtcgcaccaccaataacggcctctacatcgtaagaagattgattgga 12156900  T

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