View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13618_low_2 (Length: 438)

Name: NF13618_low_2
Description: NF13618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13618_low_2
NF13618_low_2
[»] chr1 (6 HSPs)
chr1 (21-359)||(8142221-8142560)
chr1 (15-292)||(7500900-7501177)
chr1 (15-199)||(7498112-7498299)
chr1 (349-421)||(8142136-8142208)
chr1 (350-406)||(4931654-4931710)
chr1 (229-292)||(7498499-7498560)
[»] chr2 (1 HSPs)
chr2 (300-409)||(9130957-9131066)
[»] chr5 (1 HSPs)
chr5 (302-359)||(22209802-22209859)
[»] chr4 (2 HSPs)
chr4 (310-358)||(1530418-1530466)
chr4 (309-359)||(1492294-1492344)
[»] chr3 (2 HSPs)
chr3 (300-359)||(54256587-54256646)
chr3 (376-408)||(41514446-41514478)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 8142560 - 8142221
Alignment:
Q  21 tataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaagcagct 117  Q
    ||||||||||| ||||||||||||||       ||||||||||| |   ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8142560 tataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaagttacagatttgtcatagcctccaaagcagct 8142461  T
Q  118 aatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacacttcttagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8142460 aatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacacttcttagc 8142361  T
Q  218 caatcataataccttaactcacagtgactatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatcgattaatatcggatcgtgg 317  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8142360 caatc---ataccttaactcacagtgactatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatctattaatatcggatcgtgg 8142264  T
Q  318 aaaatattggattgcc-aaaaatccaatatgacaaatagcgga 359  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  8142263 aaaatattggattgccaaaaaatccaatatgacaaatagcgga 8142221  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 7500900 - 7501177
Alignment:
Q  15 tatccatataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaa 111  Q
    ||||| |||| |||| | ||||||||||||||       |||||||||||||   |||| ||||||| |||||||| ||||||||| ||||||| |||||    
T  7500900 tatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagttacagatttgccatagcccccaaa 7500999  T
Q  112 gcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaatgaggcacactt 211  Q
     ||| ||||| ||||||||||||||||||| |  ||||||| | |||||||  ||||| |||||||||||||||| |||| ||||||||||||||||  |    
T  7501000 acagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaataaatgaggcacatat 7501099  T
Q  212 cttagccaatcataataccttaactcacagtgactatgtatggcttgaagattgtacttcatctattcttgatatgtaatt 292  Q
    ||||||||| |   || |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  7501100 cttagccaagc---atgccttaactcacaatgactatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatt 7501177  T

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Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 7498112 - 7498299
Alignment:
Q  15 tatccatataccaaatgccaagtatcttcaccnnnnnnngatgcaatttgga---catatgcctatagattcaagtaacagatttgtcatagcctccaaa 111  Q
    ||||| |||||||||||||||||||||| |||       ||||||||||| |   ||||| |||||||||| |||| |||||||||||||||||||||||    
T  7498112 tatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaagttacagatttgtcatagcctccaaa 7498211  T
Q  112 gcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaataaa 199  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  7498212 gcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaatgaatataaataaa 7498299  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 8142208 - 8142136
Alignment:
Q  349 caaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatag 421  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8142208 caaagagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgcgaacacacaaatag 8142136  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 4931654 - 4931710
Alignment:
Q  350 aaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatg 406  Q
    |||||| |||| ||||| | ||||| |||||||||||||| ||||||||||||||||    
T  4931654 aaatagtggaagctgcacacctgttgaaataaataattatatataaaataaagcatg 4931710  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 7498499 - 7498560
Alignment:
Q  229 ccttaactcacagtgactatgtatggcttgaagattgtacttcatctattcttgatatgtaatt 292  Q
    |||||||||| |||||||||||||||| ||||||   |||| ||| ||||||||||||||||||    
T  7498499 ccttaactcaaagtgactatgtatggcatgaaga--atactacatttattcttgatatgtaatt 7498560  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 9131066 - 9130957
Alignment:
Q  300 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcggaaactgcaaaactgttcaaataaataattatgtataaaata 399  Q
    |||||||||| |||| |||||||||  ||| ||||||||| | |||||| | |||||| || |  |||||| |||||||||||||||||| |||||||||    
T  9131066 attaatatcgtatcgcggaaaatatcagatcgccaaaaattcgatatgatacatagcgtaagccacaaaacggttcaaataaataattatatataaaata 9130967  T
Q  400 aagcatgcta 409  Q
    ||||||||||    
T  9130966 aagcatgcta 9130957  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 22209802 - 22209859
Alignment:
Q  302 taatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 359  Q
    ||||||| ||||  |||||||||||||| ||||||||||| |||||||||||||||||    
T  22209802 taatatctgatcacggaaaatattggatcgccaaaaatccgatatgacaaatagcgga 22209859  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 1530466 - 1530418
Alignment:
Q  310 gatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgg 358  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  1530466 gatcgtggaaagtatcggatcgccaaaaatccaatataacaaatagcgg 1530418  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 1492344 - 1492294
Alignment:
Q  309 ggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 359  Q
    |||||| ||||||||| |||| ||||||||||| |||| ||||||||||||    
T  1492344 ggatcgcggaaaatataggatcgccaaaaatccgatataacaaatagcgga 1492294  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 54256587 - 54256646
Alignment:
Q  300 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 359  Q
    ||||||| ||||||||||||||||| |||| ||||||||||   ||||| ||||||||||    
T  54256587 attaatagcggatcgtggaaaatatcggatcgccaaaaatctgctatgagaaatagcgga 54256646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 41514446 - 41514478
Alignment:
Q  376 aaataaataattatgtataaaataaagcatgct 408  Q
    |||||||||||||| ||||||||||||||||||    
T  41514446 aaataaataattatatataaaataaagcatgct 41514478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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