View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13618_low_3 (Length: 367)
Name: NF13618_low_3
Description: NF13618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13618_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 194 - 362
Target Start/End: Complemental strand, 11345409 - 11345241
Alignment:
| Q |
194 |
ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11345409 |
ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgaacacaagtctattactcatgttgatcaattcaaga |
11345310 |
T |
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| Q |
294 |
ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgatgtcc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11345309 |
ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcc |
11345241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 11345819 - 11345639
Alignment:
| Q |
15 |
gccaggttgtaaattcttgcaacgaattactctactttctgatcagttcatataacacagggtatcgtaagtattggttttgtgtatgcaaccctgccat |
114 |
Q |
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|||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
11345819 |
gccaggttgttaattcttgcaacggattactgtgctttctgatcagttcatataacacaaggtattgtaagtattggtttcgtgtatgcaaccctgccat |
11345720 |
T |
|
| Q |
115 |
gagaacaggaactagagcttttgggactcgagaccatcagctatgcggtttgaatttcagtgttggaactgaaccattagg |
195 |
Q |
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| T |
11345719 |
gagaacaggaactagagcgtttgggactcgagacagtcagctatgcggtttgaatttcagtgttggaactgaaacattagg |
11345639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 11338883 - 11338721
Alignment:
| Q |
194 |
ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga |
293 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11338883 |
ggtgtatatttgagaggcactatttactggttggctattcaaaactatttttatcctttttat-atcacaagtctattactcatgttgatcaattcaaga |
11338785 |
T |
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| Q |
294 |
ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatga |
357 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
11338784 |
ttgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatga |
11338721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 194 - 362
Target Start/End: Complemental strand, 11359287 - 11359119
Alignment:
| Q |
194 |
ggtgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaaga |
293 |
Q |
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|||||||||||||| ||||||||||||| ||| |||||| | |||||||||||||||||||||| | | | ||||||||||||||||||| ||||||| |
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| T |
11359287 |
ggtgtgtatttgagcggcactatttactagttagctattcagaactatttttatcctttttatggttatggggctattactcatgttgatcagttcaaga |
11359188 |
T |
|
| Q |
294 |
ttgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgatgtcc |
362 |
Q |
| |
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|||| |||||||| |||||||||||| ||||||||||||||| |||||| |||||||||||| |||| |
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| T |
11359187 |
ttgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcc |
11359119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 11339721 - 11339564
Alignment:
| Q |
200 |
tatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagattgttt |
299 |
Q |
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||||| || |||||||||||||||||||||||| | || |||||||| |||||| ||||| | |||||||||||| |||||||||||||||||| |||| |
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| T |
11339721 |
tatttaagtggcactatttactggttggctattcagaattatttttacccttttcatgattatgagtctattactcgtgttgatcaattcaagatggttt |
11339622 |
T |
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| Q |
300 |
cccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatga |
357 |
Q |
| |
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||||||| || |||| ||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
11339621 |
cccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatga |
11339564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 23840465 - 23840583
Alignment:
| Q |
216 |
tttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaac |
315 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||||| | | ||||||||||||||||||| ||| |||| |||||||||| ||||| || |
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| T |
23840465 |
tttactggttggctatgcaaaactatttt-atcctttttatgataaggcatgtattactcatgttgatcaactcatgattctttcccttgatctttcgac |
23840563 |
T |
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| Q |
316 |
tgagacatacatgcaatttt |
335 |
Q |
| |
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||||||||||| ||||||| |
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| T |
23840564 |
cgagacatacatccaatttt |
23840583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 335
Target Start/End: Complemental strand, 23847459 - 23847339
Alignment:
| Q |
216 |
tttactggttggctattgaaaactattttt-atcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaa |
314 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||||||| | | ||||||||||||||||||| || |||| |||||||||| ||||| | |
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| T |
23847459 |
tttattggttggctatgcaaaactattttttatcctttttatgatgagggatgtattactcatgttgatcaactcgtgattctttcccttgatctttcga |
23847360 |
T |
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| Q |
315 |
ctgagacatacatgcaatttt |
335 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
23847359 |
ccgagacatacatccaatttt |
23847339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 24031019 - 24031145
Alignment:
| Q |
196 |
tgtgtatttgagaggcactatttactggttggctattgaaaactatttttatcctttttatgatcacaagtctattactcatgttgatcaattcaagatt |
295 |
Q |
| |
|
|||| ||||||| |||||| |||||| ||||||||| | ||||||||| ||| || ||||||| | || ||||||||||||||||||| ||| |||| |
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| T |
24031019 |
tgtgcatttgagtggcactgtttactcattggctattcagaactattttaatcgttgttatgattatgagactattactcatgttgatcacttcgtgatt |
24031118 |
T |
|
| Q |
296 |
gtttcccttgacctttcaactgagaca |
322 |
Q |
| |
|
|||||||||| ||||| || |||||| |
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| T |
24031119 |
atttcccttgatctttcgaccgagaca |
24031145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 24021582 - 24021693
Alignment:
| Q |
246 |
atcctttttatgatcacaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttt |
345 |
Q |
| |
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|||||| ||||||| || || ||||||||||||| ||| |||| ||||||||||||||| ||||| || |||||| ||||||||||| ||||||| |
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| T |
24021582 |
atccttcttatgattacgagattattactcatgttaatcgattcgtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttc |
24021681 |
T |
|
| Q |
346 |
tggttttgatga |
357 |
Q |
| |
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| ||||||||| |
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| T |
24021682 |
cgattttgatga |
24021693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 23993355 - 23993420
Alignment:
| Q |
261 |
acaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacataca |
326 |
Q |
| |
|
|||||||||||| ||||| ||| ||||| ||||| |||| |||||||||||||| |||||||||| |
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|
| T |
23993355 |
acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca |
23993420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 19746904 - 19746834
Alignment:
| Q |
292 |
gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgatgtcc |
362 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||| ||||||| |||| |||||||||||||| |||| |
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| T |
19746904 |
gattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcc |
19746834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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