View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13619_high_3 (Length: 263)
Name: NF13619_high_3
Description: NF13619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13619_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 40879689 - 40879865
Alignment:
| Q |
72 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
171 |
Q |
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| T |
40879689 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
40879788 |
T |
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| Q |
172 |
ttgttccaacatagaagatttattgaaattaaagcaacaacttctgcttcacctatctcttcatgcatcacaactccttcat |
253 |
Q |
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| T |
40879789 |
ttgttccaacatagaagatttattgaaa-----gcgacaacttttgcttcacctatctcttcatgcatcacaactccttcat |
40879865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 40879578 - 40879635
Alignment:
| Q |
19 |
atgtttcacctctttcacaatttggtggcctcttggagtaattttatcacacttctca |
76 |
Q |
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| T |
40879578 |
atgtttcacctctttcacaatttggtggcctcttggagtaattttatcacacttctca |
40879635 |
T |
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