View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13619_low_2 (Length: 430)
Name: NF13619_low_2
Description: NF13619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13619_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 46942683 - 46942284
Alignment:
| Q |
15 |
acaatatcaagtatagcaatgagactacattcttattgagattataaacaactttcatcattgattgaaatgaagaggtttcgaacattcttcatgaatc |
114 |
Q |
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| T |
46942683 |
acaatatcaagtatagcaatgagactacattcttattgagattataaacaactttcatcattgattgaaatgaagaggtttcaaacattcttcatgaatc |
46942584 |
T |
|
| Q |
115 |
atgatccatgtaannnnnnnn--atggaaggactttattccttttcttcgtacttgttaaaatgatctcctccgccttatcatttatgctaaccattttc |
212 |
Q |
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| T |
46942583 |
atgatccatgtaattttttttttatggaaggactttattccttttcttcgtacttgttaaaatgatctcctccgccatatcatttatgctaaccattttc |
46942484 |
T |
|
| Q |
213 |
ttcgaagcttgatggcacaattcttcatcaacaatgttcctgcacagattattctcttcttcaacatgttctgtttgaggagaaagacgattatcacgga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46942483 |
ttcgaagcttgatggcacaattcttcatcaacaatgttcctgcacagattattctcttcttcaacatgttctgtttgaggagaaagacgattatcaccga |
46942384 |
T |
|
| Q |
313 |
agaaatattgagattttcgaagctcattgctatttagacctatacaaggtgtcacatgccgaaccattttgtctgaaattggcacaccaagtgagcttga |
412 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46942383 |
agaaatatttagattttcgaagctcattgctatttagacctatacaaggtgtcacatgccgaaccattttgtctgaaattggcacaccaagtgagcttga |
46942284 |
T |
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