View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1361_high_17 (Length: 234)

Name: NF1361_high_17
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1361_high_17
NF1361_high_17
[»] chr3 (29 HSPs)
chr3 (1-182)||(19399416-19399597)
chr3 (1-176)||(18103138-18103313)
chr3 (1-182)||(18115673-18115854)
chr3 (23-182)||(19413914-19414073)
chr3 (1-182)||(19375402-19375583)
chr3 (1-182)||(19461240-19461421)
chr3 (25-182)||(18015826-18015983)
chr3 (6-182)||(19380606-19380782)
chr3 (25-182)||(19351126-19351283)
chr3 (8-170)||(19333724-19333886)
chr3 (60-179)||(17941505-17941624)
chr3 (78-182)||(18022587-18022691)
chr3 (78-170)||(19392934-19393026)
chr3 (79-182)||(17941740-17941843)
chr3 (1-127)||(19436576-19436702)
chr3 (10-182)||(17727792-17727972)
chr3 (10-182)||(19029021-19029201)
chr3 (85-182)||(19424408-19424505)
chr3 (79-183)||(25462836-25462940)
chr3 (1-182)||(18164855-18165045)
chr3 (77-182)||(19436814-19436919)
chr3 (1-182)||(18146529-18146719)
chr3 (88-175)||(18144037-18144124)
chr3 (1-175)||(14896508-14896691)
chr3 (85-182)||(24493529-24493626)
chr3 (89-182)||(17949624-17949717)
chr3 (90-178)||(18108236-18108324)
chr3 (79-182)||(16677005-16677108)
chr3 (1-76)||(18143941-18144016)
[»] chr6 (3 HSPs)
chr6 (12-179)||(13666994-13667161)
chr6 (12-107)||(2509723-2509818)
chr6 (12-107)||(2509838-2509933)
[»] chr4 (2 HSPs)
chr4 (1-170)||(15532059-15532228)
chr4 (90-179)||(2710690-2710779)
[»] chr8 (1 HSPs)
chr8 (78-182)||(8459261-8459365)
[»] scaffold2156 (1 HSPs)
scaffold2156 (1-182)||(39-229)
[»] scaffold0640 (1 HSPs)
scaffold0640 (1-182)||(5102-5292)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 19399416 - 19399597
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  19399416 ccaactggtttcaagtagtaagtacacttccgtcattgtttgaattacagttgagtgcatgtaacctgaacaactttccatctcttgagtatttgaattt 19399515  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19399516 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 19399597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18103138 - 18103313
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||  ||||||||||||||||    
T  18103138 ccaactggtttcaagtagtaagtacacttccttcattgttagaattacagttgagttattgtaacctgaacaacttcccatcagttgagtatttgaattt 18103237  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcacc 176  Q
    || |||| ||||||| |||||||||||| | ||||| ||||| |||||| ||| |||||||||||||||| |||||    
T  18103238 gtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc 18103313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 18115673 - 18115854
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    |||| ||| ||||| |||| | ||||||||| ||| | |||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||    
T  18115673 ccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccatctgttgagtatttgaattt 18115772  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||| |||||||||||||||||||||    ||||||||||||| |||| |||||||||||||||||||| | |||||||||    
T  18115773 gtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaaagat 18115854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 19413914 - 19414073
Alignment:
Q  23 tacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttgtaactcttgat 122  Q
    ||||||||| ||| | |||||||||||| ||||| | |||||||| || ||||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  19413914 tacacttccttcactattagaattacagatgagtcattgtaacctaaataacttcccatctgttgagcatttgaatttgtcttcaattgtaactcttgat 19414013  T
Q  123 ctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    |||||  ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  19414014 ctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaaagat 19414073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 19375402 - 19375583
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    |||| |||||| ||||||| | | ||||||| ||| | ||||||||||||||||||   |||||||||||||||||||||||| |||||| |||||||||    
T  19375402 ccaattggtttgaagtagtgacttcacttccttcactattagaattacagttgagtcggtgtaacctgaacaactttccatctgttgagtttttgaattt 19375501  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||| |||||| ||||||||||||    ||||| |||||||||||| |||||||||||||||||||| |||||||||||    
T  19375502 gtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaaagat 19375583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 19461240 - 19461421
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    |||| ||| ||||| |||| | ||||||||| ||| | |||||||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||    
T  19461240 ccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaatttcccatctgttgagtatttgaattt 19461339  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||| |||||||||||||||||||||    ||||| ||||||| |||| |||||||||||||||||||| |||||||||||    
T  19461340 gtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaaagat 19461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 18015826 - 18015983
Alignment:
Q  25 cacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttgtaactcttgatct 124  Q
    ||||||| ||| | ||||||||| |||||||||  || |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||  |||    
T  18015826 cacttccttcactattagaattagagttgagtgggtgcaacctgaacaacttcccatctgttgagtatttgaatttgccttcacttgtaactctttctct 18015925  T
Q  125 ttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    |||   |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  18015926 ttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaaagat 18015983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 19380606 - 19380782
Alignment:
Q  6 tggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtctt 105  Q
    |||||||||||||| | ||||||||| ||| | |||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  19380606 tggtttcaagtagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccatctgttgagtatttgaatttgtctt 19380705  T
Q  106 cacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    |||||||||||||  |||||||    ||||||||||||| |||  |||| |||||||| |||||| |||| ||||||    
T  19380706 cacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaaagat 19380782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 19351126 - 19351283
Alignment:
Q  25 cacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttgtaactcttgatct 124  Q
    ||||||| ||| ||||| ||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  19351126 cacttccttcactgttaaaattacagttgggtgaatgtaacctgaacaacttcccatctgttgagtatttgaatttgtcttcacttgtaactcttgatct 19351225  T
Q  125 ttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||     || ||||||| |||| || |||| ||||||||||||||| |||||||||||    
T  19351226 ttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaaagat 19351283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 19333724 - 19333886
Alignment:
Q  8 gtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttca 107  Q
    ||||||| |||| | | ||||||| ||| | |||||||||||||||||||| |||||  |||||||||| |||| |  ||||||||||||||||||||||    
T  19333724 gtttcaaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccatttgatgagtatttgaatttgtcttca 19333823  T
Q  108 cttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaat 170  Q
     ||||||||||||||||||| |  |||||||| |||| |||| ||| ||||||||||||||||    
T  19333824 attgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaat 19333886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 17941505 - 17941624
Alignment:
Q  60 tgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatg 159  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||  |||||| |  ||||| ||||||| | ||||||||||||    
T  17941505 tgtaacctgaacaacttcccatctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatg 17941604  T
Q  160 ggttttttaatttcaccaaa 179  Q
    ||||||||||| ||||||||    
T  17941605 ggttttttaatctcaccaaa 17941624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 18022587 - 18022691
Alignment:
Q  78 ccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcacca 177  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||  |||||||||||||| ||||||    
T  18022587 ccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttttttaatctcacca 18022686  T
Q  178 aagat 182  Q
    |||||    
T  18022687 aagat 18022691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 19392934 - 19393026
Alignment:
Q  78 ccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaat 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||   |||||||| ||||||||||||||    
T  19392934 ccatcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaat 19393026  T

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Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 17941740 - 17941843
Alignment:
Q  79 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 178  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  17941740 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcaccaa 17941839  T
Q  179 agat 182  Q
    ||||    
T  17941840 agat 17941843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 19436576 - 19436702
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    ||||||||||||||| ||| | | ||||| | ||| | ||||||||||||||| |||| |||||| ||||||| || |||||| |||||||||| |||||    
T  19436576 ccaactggtttcaagcagtgaattcactttcttcactattagaattacagttgcgtgaatgtaacttgaacaaattcccatctgttgagtatttcaattt 19436675  T
Q  101 gtcttcacttgtaactcttgatctttc 127  Q
     ||||||||||||||||||||||||||    
T  19436676 atcttcacttgtaactcttgatctttc 19436702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 17727972 - 17727792
Alignment:
Q  10 ttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactt---------tccatctcttgagtatttgaattt 100  Q
    |||||||| | | ||||||||| ||| |||||||||||||||||||||  || ||||| ||||||||         ||||||| ||||||||||||||||    
T  17727972 ttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaattt 17727873  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||| ||||||||||| |||||||||||||| | ||||||| |||  | |||| ||| ||||||||| |||||||||||    
T  17727872 gtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggtggattttttaatctcaccaaagat 17727792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 19029201 - 19029021
Alignment:
Q  10 ttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactt---------tccatctcttgagtatttgaattt 100  Q
    |||||||| | | ||||||||| ||| |||||||||||||||||||||  || ||||| ||||||||         ||||||| ||||||||||||||||    
T  19029201 ttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaattt 19029102  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||| ||||||||||| |||||||||||||| | ||||||| |||  | |||| ||| ||||||||| |||||||||||    
T  19029101 gtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggtggattttttaatctcaccaaagat 19029021  T

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Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 19424408 - 19424505
Alignment:
Q  85 ttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||||||||||||||||||| ||||||| |||||||||||   |||||| ||| ||| |||| |||||||||||||||||||| |||||||||||    
T  19424408 ttgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgatgggttttttaatctcaccaaagat 19424505  T

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Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 25462836 - 25462940
Alignment:
Q  79 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 178  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||| |||| |||||||||| ||||||||| || | ||    
T  25462836 catctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatggtttttttaatctctcaaa 25462935  T
Q  179 agatt 183  Q
    |||||    
T  25462936 agatt 25462940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 18164855 - 18165045
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttc---------catctcttgagta 91  Q
    |||| ||| |||||| ||| ||||||||||| ||| | |||||||||||||||||| | || ||||||||||||||           ||||| || ||||    
T  18164855 ccaattggattcaagcagtgagtacacttccttcactattagaattacagttgagtaattgcaacctgaacaacttcataattggaacatcttttaagta 18164954  T
Q  92 tttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    | |||||||||||||| |||||||||||||||||||  ||||| | ||||||| |||  ||| |||||| ||||||||| |||||||||||    
T  18164955 tgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaaagat 18165045  T

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Target: chr3; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 19436814 - 19436919
Alignment:
Q  77 tccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcacc 176  Q
    ||||||| || ||||||| |||||||||||||||||||||||| |||||||| | ||| | ||||||| |||  |||| ||||||||||||||| |||||    
T  19436814 tccatctattcagtatttaaatttgtcttcacttgtaactctttatctttcagataacgatttcacctctcacttaccggatgggttttttaatctcacc 19436913  T
Q  177 aaagat 182  Q
    ||||||    
T  19436914 aaagat 19436919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 18146529 - 18146719
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttc---------catctcttgagta 91  Q
    ||||||||||||||||||||| | ||||||| ||| | ||| ||||| |||||  | | |||||||||||||||||           ||||| ||| |||    
T  18146529 ccaactggtttcaagtagtaaattcacttccttcactattaaaattaaagttgtttaattgtaacctgaacaacttcataattaacacatctattgggta 18146628  T
Q  92 tttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||||||||||||||| |||||||||||||||||   || || || |||| |||| |||||||||||| ||||||| | |||||||||    
T  18146629 tttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatgggtattttaatcttaccaaagat 18146719  T

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Target: chr3; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 18144037 - 18144124
Alignment:
Q  88 agtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcac 175  Q
    |||||||||||||||| ||| |||||||||||||||||||    ||||||||||||| |||| |||||||| ||||||||||| ||||    
T  18144037 agtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgataggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 14896691 - 14896508
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactt-----tc----catctcttgagta 91  Q
    |||| ||| |||||||||| ||||||||||| ||| | |||||| |||| |||| ||| || || |||||||||||     ||    ||||| |||||||    
T  14896691 ccaattggcttcaagtagtgagtacacttccctcactattagaactacaattgactgattgcaaactgaacaacttcatgttcaactcatcttttgagta 14896592  T
Q  92 tttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcac 175  Q
    |||||||||||||||| |||||| |||| |||||||    ||||||||||||| |||| | ||  |||||||||||||| ||||    
T  14896591 tttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatgggttttttaatctcac 14896508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 24493626 - 24493529
Alignment:
Q  85 ttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||  | |||||||||| || |||  ||||  |||  ||||||||  |||||||||||    
T  24493626 ttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaatgcattttttaacctcaccaaagat 24493529  T

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Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 17949624 - 17949717
Alignment:
Q  89 gtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    |||||||||||| |||||||||||||||||| |||||    | |||||||||||||  ||| ||||  |||||||||| ||| |||||||||||    
T  17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagat 17949717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 18108236 - 18108324
Alignment:
Q  90 tatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 178  Q
    |||||||||||||||||||||||||||||| |||||    | |||||||||||||  ||| ||||  |||||||||| ||| |||||||    
T  18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaa 18108324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 16677005 - 16677108
Alignment:
Q  79 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 178  Q
    ||||| ||| |||||||||||  |||||| |||||||||||||||||||  ||||||| || ||||||||  |||   | |||||||| ||| |||||||    
T  16677005 catctattgggtatttgaattcctcttcaattgtaactcttgatctttcttacaacaatttaacctttcagttactaaacgggtttttaaatctcaccaa 16677104  T
Q  179 agat 182  Q
    ||||    
T  16677105 agat 16677108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18143941 - 18144016
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactt 76  Q
    |||| ||| ||||| |||| | ||||||||| ||| | ||||||||||||||||||   |||||||||||||||||    
T  18143941 ccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagttcttgtaacctgaacaactt 18144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 13667161 - 13666994
Alignment:
Q  12 caagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttg 111  Q
    |||||||| | ||||||||| |||   |||||||||| |||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||| || |    
T  13667161 caagtagtgaatacacttccttcacaattagaattacggttgagaggttgtaacctgaacaacttcccatctcttgagtatttgaatttgtcttcgctgg 13667062  T
Q  112 taactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaa 179  Q
    ||||||||||||||||  | ||||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  13667061 taactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaaa 13666994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2509723 - 2509818
Alignment:
Q  12 caagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttca 107  Q
    |||||||| ||||||||||| ||| | ||||| |||  ||||| ||||| |||| |||||||||| |||||| | |||||||||||||||||||||    
T  2509723 caagtagtgagtacacttccttcactattagagttaaggttgaatgactataacttgaacaacttcccatctatagagtatttgaatttgtcttca 2509818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2509838 - 2509933
Alignment:
Q  12 caagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaatttgtcttca 107  Q
    |||||||| ||||||||||| ||| | ||||| |||  ||||| ||||| |||| |||||||||| |||||| | |||||||||||||||||||||    
T  2509838 caagtagtgagtacacttccttcactattagagttaaggttgaatgactataacttgaacaacttcccatctatagagtatttgaatttgtcttca 2509933  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 15532059 - 15532228
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactttccatctcttgagtatttgaattt 100  Q
    |||||||| |||||| ||  ||||||||||| ||| | ||||| |||  ||||||||||||||| ||||||||||| |||||| | ||||||||||||||    
T  15532059 ccaactggattcaagcagagagtacacttccttcactattagatttaaggttgagtgactgtaaactgaacaacttcccatctatcgagtatttgaattt 15532158  T
Q  101 gtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaat 170  Q
    |||||||||||||||||||||||||||    |||||||||| |  |||| ||||  ||||||||||||||    
T  15532159 gtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaat 15532228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 2710779 - 2710690
Alignment:
Q  90 tatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaa 179  Q
    ||||||||||||||||||||| |||||||||| |||||    ||||||||||||| || | ||||  |||||||||||||| ||||||||    
T  2710779 tatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatgggttttttaatctcaccaaa 2710690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 8459261 - 8459365
Alignment:
Q  78 ccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcacca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| | || | ||||| |||||||||||||| | ||||    
T  8459261 ccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgacca 8459360  T
Q  178 aagat 182  Q
    |||||    
T  8459361 aagat 8459365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 229 - 39
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaactt---------tccatctcttgagta 91  Q
    |||||||| |||||| |||||||||  |||| ||| | |||||||||||  ||||| ||||||| || ||||||||         ||||||| |||||||    
T  229 ccaactggcttcaagcagtaagtacctttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaatccatctattgagta 130  T
Q  92 tttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||| |||||||||||||||||||||||| |||||||    |||||||| ||||   || ||||  |||||||||||||| | |||||||||    
T  129 tttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagat 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5102 - 5292
Alignment:
Q  1 ccaactggtttcaagtagtaagtacacttccgtcattgttagaattacagttgagtgactgtaacctgaacaacttt---------ccatctcttgagta 91  Q
    |||||||| |||||| ||||||||| ||||| ||| | |||||||||||  ||||| ||||||| || ||||||||          |||||| |||||||    
T  5102 ccaactggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattgagta 5201  T
Q  92 tttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagat 182  Q
    ||| |||||||||||||||||||||||| |||||||    |||||||| ||||   || ||||  |||||||||||||| | |||||||||    
T  5202 tttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagat 5292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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