View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1361_high_4 (Length: 449)

Name: NF1361_high_4
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1361_high_4
NF1361_high_4
[»] chr2 (8 HSPs)
chr2 (96-435)||(35026022-35026361)
chr2 (233-439)||(35036832-35037038)
chr2 (233-439)||(35008895-35009101)
chr2 (230-419)||(35019306-35019495)
chr2 (233-439)||(36288447-36288653)
chr2 (228-434)||(35033163-35033369)
chr2 (224-419)||(35012280-35012475)
chr2 (231-374)||(34998837-34998980)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 96 - 435
Target Start/End: Original strand, 35026022 - 35026361
Alignment:
Q  96 aacaacattacacatcaaa-tttcaaaaatcatagaatataattgaacttatnnnnnnnnnnnnntctacatatata-atttatatagctttgtccctag 193  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||              |||||||||||| |||| |||||||||||||||||    
T  35026022 aacaaccttacacatcaaaatttcaaaaatcatagaatataattgaactta--cacacacacacatctacatatatatatttgtatagctttgtccctag 35026119  T
Q  194 ttcattacattcttgtatcaaccatgggatctcttcctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacct 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35026120 ttcattacattcttgtatcaaccatgggatctcttcctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacct 35026219  T
Q  294 ctccaataaattagcnnnnnnnggtcacaaaatatcattcttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatc 393  Q
    |||||| ||||||||       ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  35026220 ctccaacaaattagcaaaaaaaggtcacaaaatatcattcttcatccccaaaaaaacacaaaccaagttacaacatctcaacctaaacccaaatctcatc 35026319  T
Q  394 actttttaccctctcagtgttcctcacattgatggtcttccc 435  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  35026320 actttttaccctctcaatgttcctcacattgatggtcttccc 35026361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 439
Target Start/End: Complemental strand, 35037038 - 35036832
Alignment:
Q  233 ctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaatatcatt 332  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||       || |||||||| || ||    
T  35037038 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagccaaaaggggacacaaaatctcttt 35036939  T
Q  333 cttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtctt 432  Q
    |||||| |||   |||| ||||||||| ||| ||||  |||||||| | ||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  35036938 cttcattcccacgaaaacacaaaccaaattagaacaattcaacctttatccaaatctcatcactttttaccctctcaatgttcctcacattcatggtctt 35036839  T
Q  433 ccctttg 439  Q
    || ||||    
T  35036838 ccatttg 35036832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 439
Target Start/End: Original strand, 35008895 - 35009101
Alignment:
Q  233 ctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaatatcatt 332  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||       || |||||||| || ||    
T  35008895 ctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagccaaaaggggacacaaaatctcttt 35008994  T
Q  333 cttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtctt 432  Q
    |||||| ||| | |||| ||||||||| ||| ||||  |||||||| | |||||  | ||||||||||||||||||| ||||||||| ||| ||||||||    
T  35008995 cttcattcccaagaaaacacaaaccaaattagaacaattcaacctttatccaaatttaatcactttttaccctctcaatgttcctcatattcatggtctt 35009094  T
Q  433 ccctttg 439  Q
    || ||||    
T  35009095 ccatttg 35009101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 419
Target Start/End: Complemental strand, 35019495 - 35019306
Alignment:
Q  230 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaatatc 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||       ||||||||||||||    
T  35019495 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcacttctccaacaaattagcaataagaggtcacaaaatatc 35019396  T
Q  330 attcttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctca 419  Q
     |||||||||||  |||| | ||  | |||||||||||||||||| ||| | ||||| || || || |||| |||| |||  ||||||||    
T  35019395 gttcttcatccctaaaaacacactcaacaagttacaacatctcaatcttcatccaaatcttattacgtttttccctatcacagttcctca 35019306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 233 - 439
Target Start/End: Original strand, 36288447 - 36288653
Alignment:
Q  233 ctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaatatcatt 332  Q
    |||||||||||||||||| |||||||||||| ||||||||| | |  ||||||||||||||||| || | ||||||       ||  ||||||  || ||    
T  36288447 ctttgcacatagcaatgtctccatggtttgcaatgggacacctaattccatatcttcacctctcaaacatattagccaaaaagggagacaaaacctcttt 36288546  T
Q  333 cttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtctt 432  Q
    |||||||||| | |||| ||||||||||||| || |  |||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| || ||     
T  36288547 cttcatccccaagaaaacacaaaccaagttagaaaaattcaacctttacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggccta 36288646  T
Q  433 ccctttg 439  Q
    |||||||    
T  36288647 ccctttg 36288653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 434
Target Start/End: Original strand, 35033163 - 35033369
Alignment:
Q  228 tcctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaata 327  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |||||       || |||||||||    
T  35033163 tcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcacctctcaaacaagttagcattaagaggacacaaaata 35033262  T
Q  328 tcattcttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatg 427  Q
    ||||||||||| ||  |||| | ||  | |||||||||| ||||||| ||| | ||||| || || || |||| |||| |||  ||||||||  || |||    
T  35033263 tcattcttcatacctaaaaacacactcaacaagttacaatatctcaatctttatccaaatcttattacctttttccctatcacagttcctcatgttaatg 35033362  T
Q  428 gtcttcc 434  Q
    |||||||    
T  35033363 gtcttcc 35033369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 419
Target Start/End: Complemental strand, 35012475 - 35012280
Alignment:
Q  224 ctcttcctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaa 323  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||| || ||||||||       ||||||||    
T  35012475 ctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatctccacttctcaaacaaattagcaataagaggtcacaa 35012376  T
Q  324 aatatcattcttcatcccccaaaaaatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctca 419  Q
    |||||| |||||||||||  |||| | ||  | |||||| ||||||||||| ||| | ||||| || || || |||| |||| |||  ||||||||    
T  35012375 aatatcgttcttcatccctaaaaacacactcaacaagttgcaacatctcaatcttcatccaaatcttattacatttttccctatcacagttcctca 35012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 374
Target Start/End: Complemental strand, 34998980 - 34998837
Alignment:
Q  231 tcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttcacctctccaataaattagcnnnnnnnggtcacaaaatatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| | | | |||||| || |||||||        |||||||||||||||    
T  34998980 tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccatttatccgcctctctaacaaattagtaataagaggtcacaaaatatca 34998881  T
Q  331 ttcttcatcccccaaaaaatacaaaccaagttacaacatctcaa 374  Q
    ||| |||||||| |||| | ||  | ||||||||||||||||||    
T  34998880 ttcatcatccccaaaaacacactcaacaagttacaacatctcaa 34998837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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