View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_high_6 (Length: 439)
Name: NF1361_high_6
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 31 - 438
Target Start/End: Complemental strand, 2798729 - 2798322
Alignment:
| Q |
31 |
atatatttcatccgagacacaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798729 |
atatatttcatccgagacacaataacctctaaaacagaacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
2798630 |
T |
|
| Q |
131 |
gtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798629 |
gtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
2798530 |
T |
|
| Q |
231 |
tccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataa |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2798529 |
tccagttaattcaactactgcaaatttaagaccacccccaaatttcttctcccaatcacgataccgttccttggcaagagcttcaatgggtgctacataa |
2798430 |
T |
|
| Q |
331 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcaacagctaggg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
|
|
| T |
2798429 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcagcaactaagg |
2798330 |
T |
|
| Q |
431 |
ctttgtca |
438 |
Q |
| |
|
| |||||| |
|
|
| T |
2798329 |
cattgtca |
2798322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 438
Target Start/End: Original strand, 1675471 - 1675878
Alignment:
| Q |
31 |
atatatttcatccgagacacaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675471 |
atatatttcatccgagacacaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
1675570 |
T |
|
| Q |
131 |
gtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1675571 |
gtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
1675670 |
T |
|
| Q |
231 |
tccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataa |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1675671 |
tccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgttccttggcaagagcttcaatgggtgcttcataa |
1675770 |
T |
|
| Q |
331 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcaacagctaggg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| || |
|
|
| T |
1675771 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactccctgtcggagcagcaactaagg |
1675870 |
T |
|
| Q |
431 |
ctttgtca |
438 |
Q |
| |
|
| |||||| |
|
|
| T |
1675871 |
cattgtca |
1675878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 31 - 438
Target Start/End: Original strand, 1672996 - 1673403
Alignment:
| Q |
31 |
atatatttcatccgagacacaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1672996 |
atatatttcatccgagacacaataacctctaaaactgtacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
1673095 |
T |
|
| Q |
131 |
gtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1673096 |
gtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
1673195 |
T |
|
| Q |
231 |
tccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataa |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1673196 |
tccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgttccttggcaagagcttcaatgggtgcttcataa |
1673295 |
T |
|
| Q |
331 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcaacagctaggg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| || |
|
|
| T |
1673296 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactccctgtcggagcagcaactaagg |
1673395 |
T |
|
| Q |
431 |
ctttgtca |
438 |
Q |
| |
|
| |||||| |
|
|
| T |
1673396 |
cattgtca |
1673403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 31 - 438
Target Start/End: Original strand, 1681999 - 1682406
Alignment:
| Q |
31 |
atatatttcatccgagacacaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681999 |
atatatttcatccgagacacaataacctctaaaactgaacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacat |
1682098 |
T |
|
| Q |
131 |
gtttcctctgtttccaacagcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1682099 |
gtttcctctgtttccaacggcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttc |
1682198 |
T |
|
| Q |
231 |
tccagttaattcaactactgccaatttaagaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataa |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1682199 |
tccagttaattcaactactgctaatttaagaccacccccaaatttcttctcccaatcacgataccgttccttggcaagagcttcaatgggtgctacataa |
1682298 |
T |
|
| Q |
331 |
acaacacgcatgacactatcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcaacagctaggg |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| || |
|
|
| T |
1682299 |
acaacacgcatgacactatcagaccctttttgatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccggtcggagcagcaactaagg |
1682398 |
T |
|
| Q |
431 |
ctttgtca |
438 |
Q |
| |
|
| |||||| |
|
|
| T |
1682399 |
cattgtca |
1682406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 49 - 438
Target Start/End: Complemental strand, 29267884 - 29267495
Alignment:
| Q |
49 |
acaataacctctaaaacaggacccctttgacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaac |
148 |
Q |
| |
|
||||||||||| |||||||| || | || |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29267884 |
acaataacctccaaaacagggcctccctggcctccaattaagtgaagttcatcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccagc |
29267785 |
T |
|
| Q |
149 |
agcgggataaagcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttctccagttaattcaactac |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||| ||||| || ||||| |
|
|
| T |
29267784 |
ggcgggataaagcatcccacttctctggagtactaataataacctgacctttctcaagcagtttcagatcagtagcggtttctccggttaactccactac |
29267685 |
T |
|
| Q |
249 |
tgccaatttaagaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataaacaacacgcatgacacta |
348 |
Q |
| |
|
||| ||||||||||| || ||||| |||||||||||| |||||| |||||||||||||||||||| || ||| | ||||||||| |||||||||||| |
|
|
| T |
29267684 |
cttcaacttaagaccacccccgaattttttctcccaatcacgatacctttccttggcaagagcttcaacgggtgcaatataaacaacgcgcatgacacta |
29267585 |
T |
|
| Q |
349 |
tcagacccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagcaacagctagggctttgtca |
438 |
Q |
| |
|
|| | | ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| | |||||| |
|
|
| T |
29267584 |
tccggcaatttttgatggttcctcaaaattgcaaattctgcacatatagtcttgccactcccagttggagcagcaactaggacattgtca |
29267495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 418
Target Start/End: Original strand, 29185572 - 29185831
Alignment:
| Q |
159 |
agcatcccatttctctggagtactaataataatctgacctttctcaagcagtttcagatctgttgttgtttctccagttaattcaactactgccaattta |
258 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||| |||| | |||| || || |||| || || |||||| ||||||||||||| ||| || |
|
|
| T |
29185572 |
agcatcccatctctctggtgtactaacaataatctgtccttccctcagcaattccaaatctatttgtggatctccacttaattcaactaccttcaacttg |
29185671 |
T |
|
| Q |
259 |
agaccacctccaaatttcttctcccaatcatgataccgttccttggcaagagcttcaatggatgctacataaacaacacgcatgacactatcagaccctt |
358 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| | ||| ||| ||||||||||| |||| ||| || | |||||||||| ||||| || | | | | |
|
|
| T |
29185672 |
agaccattcccaaatttcttatcccagtcaaggtactgttgcttggcaagagtttcattgggtgtaagataaacaacaagcatgtcattgttggtattta |
29185771 |
T |
|
| Q |
359 |
ttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggag |
418 |
Q |
| |
|
| | ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29185772 |
tctgatgattcctcaaaattgcaaactctgcacatatagtcttgccactcccagttggag |
29185831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 11698286 - 11698220
Alignment:
| Q |
354 |
cccttttttatgattcctcaaaattgcaaattctgcacatatagtcttaccactcccagtcggagca |
420 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||| | ||||| ||||| |||||||||||| |
|
|
| T |
11698286 |
ccctttttgatgatttctcaaaattgcaatttctgcacatgtggtctttccacttccagtcggagca |
11698220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 11698554 - 11698410
Alignment:
| Q |
77 |
gacctccaatcaagtgtagctcatcaatgatgaaaagactaacttgttgaacatgtttcctctgtttccaacagcgggataaagcatcccatttctctgg |
176 |
Q |
| |
|
|||||||||| ||||| || || |||| ||| |||||| ||||||||||| || | | |||||||| ||||||||||||||||||| ||| || |
|
|
| T |
11698554 |
gacctccaatgaagtggaggtcgtcaaggatcaaaagaggaacttgttgaatttggattatttgtttccattggcgggataaagcatcccatatctgcgg |
11698455 |
T |
|
| Q |
177 |
agtactaataataatctgacctttctcaagcagtttcagatctgt |
221 |
Q |
| |
|
||| |||| |||||||| |||| ||||||||||||| |||||| |
|
|
| T |
11698454 |
ggtagtaatgataatctgtccttcttcaagcagtttcaaatctgt |
11698410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University