View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_high_8 (Length: 341)
Name: NF1361_high_8
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 47 - 328
Target Start/End: Complemental strand, 21019805 - 21019524
Alignment:
| Q |
47 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgact |
146 |
Q |
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| T |
21019805 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgactatgtatattgattctgttgttgtagaacgtaatgact |
21019706 |
T |
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| Q |
147 |
ctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattat |
246 |
Q |
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| T |
21019705 |
ctcaacctccgcttgactggacaatgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctcctaagattat |
21019606 |
T |
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| Q |
247 |
tcaccgtgatgtgaaagctgcaaacatatattttttataatagcaaatattattaatgcatccaaaactctcaagaagagaa |
328 |
Q |
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| T |
21019605 |
tcaccgtgatgtgaaagctgcaaacatattttttttttaatagcaaatattattaatgcatccaaaactctcaagaagagaa |
21019524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 275
Target Start/End: Original strand, 1435752 - 1435974
Alignment:
| Q |
47 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgact |
146 |
Q |
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| T |
1435752 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaa---aaccgcgtctatgtatattgattctgttgttgtagaacgtaatggct |
1435848 |
T |
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| Q |
147 |
ctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattat |
246 |
Q |
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| T |
1435849 |
ctcaacctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgac---cctaagattat |
1435945 |
T |
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| Q |
247 |
tcaccgtgatgtgaaagctgcaaacatat |
275 |
Q |
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| T |
1435946 |
tcaccgtgatgtgaaagctgcaaatatat |
1435974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 107 - 275
Target Start/End: Original strand, 1448632 - 1448797
Alignment:
| Q |
107 |
tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga |
206 |
Q |
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| T |
1448632 |
tctatgtatattgattgtgtttttgtagaacgtaatgactctcaaccgccgcttgactggccaatgcggaagaatattgcgctaggagctgccagggggc |
1448731 |
T |
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| Q |
207 |
ttgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat |
275 |
Q |
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| T |
1448732 |
ttgcttacttgcatgatcattgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat |
1448797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 1441253 - 1441382
Alignment:
| Q |
132 |
tagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtga |
231 |
Q |
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| T |
1441253 |
tagaacgtaatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtga |
1441352 |
T |
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| Q |
232 |
ccctcctaagattattcaccgtgatgtgaaagc |
264 |
Q |
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| T |
1441353 |
c---cctaagattattcatcgtgatgtgaaagc |
1441382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 1429207 - 1429364
Alignment:
| Q |
115 |
tattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttac |
214 |
Q |
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| T |
1429207 |
tattgattttgatgttgtagaacgtaacgaggttgatccgccgcttgagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttac |
1429306 |
T |
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| Q |
215 |
ttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat |
275 |
Q |
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| T |
1429307 |
ttgcatgatcactgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat |
1429364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 1455348 - 1455542
Alignment:
| Q |
64 |
tgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgac |
163 |
Q |
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||||||||||||||| || |||||||| || || ||| | |||||||||||| || |||||||||||||||||||| ||||||||| || ||||| |
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| T |
1455348 |
tgttgaatttcaaaatttgcagtttca---tattataactccatctatgtatattctttttgttgttgtagaacgtaatgcctctcaaccgccacttgat |
1455444 |
T |
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| Q |
164 |
tggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaag |
263 |
Q |
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| T |
1455445 |
tggccaatgaggaagaatattgggctgggagctgccaaggggctggcttacttgcatgatcattgtga---tcctaaggttattcatcgtgatgtgaaag |
1455541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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