View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_high_9 (Length: 335)
Name: NF1361_high_9
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 2489695 - 2489416
Alignment:
| Q |
21 |
ggtgcaacttttcgtattggtgcaacattgaattagcttaccaaatggtgcttacgtccaaatggttataaagttctggcagaacttgaatgaaaattta |
120 |
Q |
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| T |
2489695 |
ggtgcaacttttcgtattggtgcaacattgaattagcttaccaaatggtgcttacgtccaaatggttataaagttctggcagaacttgaatgaaaattta |
2489596 |
T |
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| Q |
121 |
ctacttcagatgatctaaactgtatggatgttctattcttacctgattttaacatcaaccttgtgtcaattatactttggtttcttactcacaatctgcc |
220 |
Q |
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| T |
2489595 |
ctacttcagatgatctaaactgtatggatgttctattcttacctgattttaacatcaaccttgtttcaattatactttggtttcttactcacaatctgcc |
2489496 |
T |
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| Q |
221 |
tttatgtgcttagaatctctaaatatctatttcattcattttgattttaaattagaaacttctccaagcctggtgaaatg |
300 |
Q |
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| T |
2489495 |
tttatgtgcttcgaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaagcctggtgaaatg |
2489416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 2532957 - 2532882
Alignment:
| Q |
112 |
gaaaatttactacttcagatgatctaaactgtatggatgttctattcttacctgattttaacatcaaccttgtgtc |
187 |
Q |
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| T |
2532957 |
gaaaagttactactttagatgatctaaaacttatggatgttctattcttacctgattttaatattaaccttgtgtc |
2532882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 5034823 - 5034688
Alignment:
| Q |
92 |
agttctggcagaacttgaatgaaaatttactacttcagatgatctaaactgtatggatgttctattcttacctgattttaacatcaaccttgtgtcaatt |
191 |
Q |
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| T |
5034823 |
agttttggcagaactggaaggaaaatttactacttcagatgatctaa-------ggatgttatattcttacttgattttattatcaaacttgtgtctagt |
5034731 |
T |
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| Q |
192 |
atactttggtttcttactcacaatctgcctttatgtgcttagaat |
236 |
Q |
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| T |
5034730 |
agatgttcgtttgttact--caatcttcctttatgtgcttagaat |
5034688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 5034609 - 5034553
Alignment:
| Q |
243 |
atatctatttcattcattttgattttaaattagaaacttctccaagcctggtgaaat |
299 |
Q |
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| T |
5034609 |
atatctatttcattcatattgatgtgaaattagaaacttctccaagcatggtgaaat |
5034553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 2517652 - 2517579
Alignment:
| Q |
112 |
gaaaatttactacttcagatgatctaaactg--tatggatgttctattcttacctgattttaacatcaaccttg |
183 |
Q |
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| T |
2517652 |
gaaaagttactactttagaggatctaaaccaattatggatgttctattcttacctgattttaatatcaaccttg |
2517579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 2498527 - 2498454
Alignment:
| Q |
125 |
ttcagatgatctaaactgtatggatgttctattcttacctgattttaacatcaaccttgtgtcaattatacttt |
198 |
Q |
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| T |
2498527 |
ttcagacggtctaaaccttaaggatgttctattcttacctgattttaatatcaaccttgtgcctattatccttt |
2498454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 2626931 - 2627016
Alignment:
| Q |
151 |
ttctattcttacctgattttaacatcaaccttgtgtcaattatactttggtttcttactcacaatctgcctttatgtgcttagaat |
236 |
Q |
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| T |
2626931 |
ttctattcttaactgattttgatatcaaccttatgtctattagacttgagcttcttactcggattctgcctttatgtgtttagaat |
2627016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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