View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_low_10 (Length: 446)
Name: NF1361_low_10
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 421
Target Start/End: Original strand, 54430764 - 54431155
Alignment:
| Q |
30 |
atttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaatacaaactaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54430764 |
atttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaatacaaactaa |
54430863 |
T |
|
| Q |
130 |
tggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaataatctagatgtggggta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54430864 |
aggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaatagtctagatgtggggta |
54430963 |
T |
|
| Q |
230 |
aatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctccatttagtcc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54430964 |
aatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctccatttagtcc |
54431063 |
T |
|
| Q |
330 |
tgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcatctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54431064 |
tgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcttctca |
54431155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University