View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_low_12 (Length: 420)
Name: NF1361_low_12
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_12 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 84 - 420
Target Start/End: Original strand, 30302697 - 30303033
Alignment:
| Q |
84 |
atataaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctct |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30302697 |
atataaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaatttttttcctagcctcagtttgtgtctct |
30302796 |
T |
|
| Q |
184 |
tctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30302797 |
tctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaatgaaaatggtcacattcgtctccttc |
30302896 |
T |
|
| Q |
284 |
aaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30302897 |
aaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgccttttggaataccactccaaacctcacactctctttcttccacaacacaa |
30302996 |
T |
|
| Q |
384 |
tgatgcggactttatccttgcagtccttagtggtaat |
420 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
30302997 |
tgatgctgacttcatccttgcagtccttagtggtaat |
30303033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 88 - 420
Target Start/End: Original strand, 30290018 - 30290347
Alignment:
| Q |
88 |
aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttcta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30290018 |
aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttgatgctgctgggaatttttttcctagcctcagtttgtgtctcttcta |
30290117 |
T |
|
| Q |
188 |
aagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaag |
287 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30290118 |
gatccgatcat---gatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaag |
30290214 |
T |
|
| Q |
288 |
gttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgat |
387 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30290215 |
attcgacaaacgctccaaaatatttgaaaatctccaaaactaccgtcttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgat |
30290314 |
T |
|
| Q |
388 |
gcggactttatccttgcagtccttagtggtaat |
420 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| |
|
|
| T |
30290315 |
gctgactttatccttgcagtgcttagtggtaat |
30290347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 88 - 420
Target Start/End: Original strand, 30297515 - 30297847
Alignment:
| Q |
88 |
aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttcta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
30297515 |
aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttgatgctgctgggaatttttttcctggcctcagtttgtgtatcttcta |
30297614 |
T |
|
| Q |
188 |
aagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaag |
287 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
30297615 |
gagatgatcgacacgatcaagagaacccttttttctttaatgctaaccatttccaaactctttttgagaacgaaaatggtcacattcgtctcctccaaag |
30297714 |
T |
|
| Q |
288 |
gttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgat |
387 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30297715 |
gtttgacaaacgttccaaaatatttgagaatcttcaaaactatcgccttttggaatatcactccaaacctcacactctctttcttccacaacacaatgat |
30297814 |
T |
|
| Q |
388 |
gcggactttatccttgcagtccttagtggtaat |
420 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||| |
|
|
| T |
30297815 |
gctgacttcatccttgcagtgcttagtggtaat |
30297847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 104 - 420
Target Start/End: Original strand, 30313584 - 30313897
Alignment:
| Q |
104 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
203 |
Q |
| |
|
|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||||||||||||||||||| | |||||| || |
|
|
| T |
30313584 |
aaatcaatatggcaatcaaagctccttcttcacttttgatgctgcttggaactgttttcctagcctcagtttgtgtctcttctagatctgatcaa---ga |
30313680 |
T |
|
| Q |
204 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttca |
303 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||| | || |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
30313681 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaacgaaaatggtcacattcggcttctccaaaggtttgacaaacgttcc |
30313780 |
T |
|
| Q |
304 |
aaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
30313781 |
aaaatatttgagaatctccaaaactatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttg |
30313880 |
T |
|
| Q |
404 |
cagtccttagtggtaat |
420 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30313881 |
cagtccttagtggtaat |
30313897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 104 - 420
Target Start/End: Original strand, 30285077 - 30285390
Alignment:
| Q |
104 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
203 |
Q |
| |
|
|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||| ||||||||||||||| | |||||| || |
|
|
| T |
30285077 |
aaatcaatatggcaatcaaagctccttgttcacttttgatgctgcttggaattgtattcctagcctcaatttgtgtctcttctagatctgatcaa---ga |
30285173 |
T |
|
| Q |
204 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttca |
303 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||| | || |||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
30285174 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaatgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttcc |
30285273 |
T |
|
| Q |
304 |
aaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttg |
403 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
30285274 |
aaaatatttgaaaatcttcaaaactaccgactcttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttg |
30285373 |
T |
|
| Q |
404 |
cagtccttagtggtaat |
420 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
30285374 |
tagtcgttagtggtaat |
30285390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 417
Target Start/End: Original strand, 46808707 - 46808886
Alignment:
| Q |
238 |
ttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttt |
337 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||| | |||||||| |||||||||||||| ||||| | ||| | ||||||| || |||| |
|
|
| T |
46808707 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttcaaaatttaaaaaactaccgtcttt |
46808806 |
T |
|
| Q |
338 |
tggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggt |
417 |
Q |
| |
|
|||| ||| ||||||| |||||| |||| || || || |||| |||||| ||||||||||||| |||||| |||||| |
|
|
| T |
46808807 |
tggagtacagagccaaaccccacaccatcttcctcccccaccacactgatgccgactttatccttgtagtcctcagtggt |
46808886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University