View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_14 (Length: 382)
Name: NF1361_low_14
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 32238623 - 32238973
Alignment:
| Q |
25 |
agacattgaaatgagaagaatatatcgtaagctcaaacggagacaatttcagatttaaaannnnnnnnnnnnnnacaacctatgaagccctgatacctga |
124 |
Q |
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| T |
32238623 |
agacattgaaatgagaagaatatattctaagctcaaacggagacaattttagatttaaagaaaattttgtttttacaacctatgaagccctgatacctga |
32238722 |
T |
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| Q |
125 |
cacgatataaatatgagacgtataaatattggctttagaggttacaacccataatggttagattaaaaaagaaaatttatcaattgactatagaggattt |
224 |
Q |
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| T |
32238723 |
cacgatacgaatacgagacgtattagtattggctttagaggttacaacccataatggttagattaaaaaagaaaatttatcaattgactatagaggattt |
32238822 |
T |
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| Q |
225 |
-aggttggtccaaattaagcacactaactaaattttcatcaaatcaaggattgaagagaaaccaatcttacccttgagttcagtcaatgcactaatacta |
323 |
Q |
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| T |
32238823 |
taggttggtccaaattaagcacactaactaaattttcatcaaatcaaggattgaagagaaatcaatcttacccttgagttcagtcaatgcactaatacta |
32238922 |
T |
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| Q |
324 |
gaaagttcatcacgtgtagcccaagccaacatattagcagctagaataatc |
374 |
Q |
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| T |
32238923 |
gaaagttcatcacgtgtagcccaagccaacatattagcagctagaaaaatc |
32238973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 39674837 - 39674805
Alignment:
| Q |
99 |
acaacctatgaagccctgatacctgacacgata |
131 |
Q |
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| T |
39674837 |
acaacctatgaagccccgatacctgacacgata |
39674805 |
T |
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