View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_17 (Length: 339)
Name: NF1361_low_17
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 295
Target Start/End: Complemental strand, 258588 - 258389
Alignment:
| Q |
81 |
atcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatca |
180 |
Q |
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| T |
258588 |
atcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatca |
258499 |
T |
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| Q |
181 |
gagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaac |
280 |
Q |
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| T |
258498 |
gagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaaac |
258404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 657333 - 657532
Alignment:
| Q |
81 |
atcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatca |
180 |
Q |
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| T |
657333 |
atcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatca |
657422 |
T |
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| Q |
181 |
gagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaac |
280 |
Q |
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| T |
657423 |
gagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaaac |
657517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 843068 - 843267
Alignment:
| Q |
81 |
atcataggatctacacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatca |
180 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
843068 |
atcataggatctacacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatca |
843157 |
T |
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| Q |
181 |
gagcaagcatattgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
843158 |
gagcaagcatattgttaatcatcaacaagcatcatagt-aaactaaaacttcaaagaaactaagtttgtcacttgc----atataggtttcttcctaaac |
843252 |
T |
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