View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_low_19 (Length: 323)
Name: NF1361_low_19
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 87 - 314
Target Start/End: Complemental strand, 43852887 - 43852655
Alignment:
| Q |
87 |
aacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggaaggaggttatataattgtcatt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43852887 |
aacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggagggaggttatataattgtcatt |
43852788 |
T |
|
| Q |
187 |
aattagtgtcacttcgactaataaaaactttcatcttccttgttctttttt-----nnnnnnnnncaagaagagattaagaatatatatgatcttatttc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
43852787 |
aattagtgtcacttcgactaataaaaactttcatcttccatgttctttttttaaaataaaaaaaaaaaaaagagattaagaatatatatgatcttatttc |
43852688 |
T |
|
| Q |
282 |
aagttgttttcactttatttcaatgagaataat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43852687 |
aagttgttttcactttatttcaatgagaataat |
43852655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University