View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_23 (Length: 297)
Name: NF1361_low_23
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_23 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 35 - 293
Target Start/End: Original strand, 27765678 - 27765936
Alignment:
| Q |
35 |
gtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaataggtaaacttataactttctcaagaaaatcggtgaagtttattttgatg |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27765678 |
gtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaataggtgaacttataactttcttaagaaaatcggtgaagtttattttgatg |
27765777 |
T |
|
| Q |
135 |
aaattgtgaggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatttg |
234 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27765778 |
aaattgtgaggattgaagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactatttttctctaatttctatcaatttg |
27765877 |
T |
|
| Q |
235 |
ttagggtttggaaatctctaccactactttatatttgcaaatcatctttcttttctctc |
293 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27765878 |
ttagggtttggaaatctctactactactttatatttgcaaatcatctttcttttctctc |
27765936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 293
Target Start/End: Original strand, 12870513 - 12870772
Alignment:
| Q |
33 |
atgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaataggtaaacttataactttctcaagaaaatcggtgaagtttattttga |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12870513 |
atgtgtcgtgtcttgcttgctgttcatttggttatgcaaaccggattgtaaatcggtgaacttgtaactttctcaagaaaatcggtgaagtttattttga |
12870612 |
T |
|
| Q |
133 |
tgaaattgtgaggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatt |
232 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12870613 |
tgaaattgtgaggattggagtacgattgttgggatggaatttcttgaatcaattttaggta-ccccttctctcactatttttctctaatttctatcaatt |
12870711 |
T |
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| Q |
233 |
tgttagggtttggaaatctctaccactactttatatttgcaaatcatctttcttttctctc |
293 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870712 |
tgttagggtttagaaatctctaccactactttatatttgcaaatcatctttcttttctctc |
12870772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 31770520 - 31770372
Alignment:
| Q |
139 |
tgtgaggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatttgttag |
238 |
Q |
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|||||||||||||||||||||||| ||| |||| | ||| |||| ||||||||| | || ||||||||||||||||||||||||||||||||||||| |
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| T |
31770520 |
tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa |
31770422 |
T |
|
| Q |
239 |
ggtttggaaatctctaccactactttatatttgcaaatcatctttctttt |
288 |
Q |
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||||| |||||||||||||| ||||||| |||||||| ||| |||||||| |
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| T |
31770421 |
ggtttagaaatctctaccaccactttatctttgcaaaacatttttctttt |
31770372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 7607899 - 7607812
Alignment:
| Q |
201 |
ctctcactatttttctctaatttctatcaatttgttagggtttggaaatctctaccactactttatatttgcaaatcatctttctttt |
288 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| ||| |||||||| |
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| T |
7607899 |
ctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctttt |
7607812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 293
Target Start/End: Original strand, 28513 - 28661
Alignment:
| Q |
143 |
aggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatttgttagggtt |
242 |
Q |
| |
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||||||||||||| |||||| |||||||| | ||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28513 |
aggattggagtac-atggttcagatggaatattttgtatcagttttaggtactccct-ctctcactatttttctctaatttctatcaatttgttaaggtt |
28610 |
T |
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| Q |
243 |
tggaaatctctaccactactttatatttgcaaatcatctttcttttctctc |
293 |
Q |
| |
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| |||||||||||||| ||||||| |||||||| ||| || ||||||||| |
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| T |
28611 |
tagaaatctctaccaccactttatctttgcaaaacattttctttttctctc |
28661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 41810794 - 41810939
Alignment:
| Q |
139 |
tgtgaggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatttgttag |
238 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | ||| |||| ||||||||| | || ||||||||||||||||||||||||||||||||||||| |
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| T |
41810794 |
tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa |
41810892 |
T |
|
| Q |
239 |
ggtttggaaatctctaccactactttatatttgcaaatcatctttct |
285 |
Q |
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||||| |||||||||| ||| ||||||| |||||||| ||| ||||| |
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| T |
41810893 |
ggtttagaaatctctaacaccactttatctttgcaaaacatttttct |
41810939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 143 - 293
Target Start/End: Complemental strand, 12538069 - 12537921
Alignment:
| Q |
143 |
aggattggagtacgatggttgggatggaatttcttgaatcaaatttaggtacccccttctctcactatttttctctaatttctatcaatttgttagggtt |
242 |
Q |
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|
||||||||||||| |||||| |||||||| | ||| |||| ||||||||| || | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12538069 |
aggattggagtac-atggtttagatggaatattttgtatcagttttaggtactccat-ctctcactatttttctctaatttctatcaatttgttaaggtt |
12537972 |
T |
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| Q |
243 |
tggaaatctctaccactactttatatttgcaaatcatctttcttttctctc |
293 |
Q |
| |
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| |||||||| ||||| ||||||| |||||||| ||| ||| ||||||||| |
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| T |
12537971 |
tagaaatctccaccacaactttatctttgcaaaacattttttttttctctc |
12537921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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