View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_24 (Length: 292)
Name: NF1361_low_24
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 16120644 - 16120382
Alignment:
| Q |
30 |
gcataaaccttaattcactaccaaagcttcctgcatccttgcaaaacttgagcgccattaactgcactaatctggacacaaactccattcaaagagaaat |
129 |
Q |
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| T |
16120644 |
gcataaaccttaattcactaccaaagcttcctgcatccttggaagatttgagtgccattaactgcacttatctggacacaaactccattcaaagagaaat |
16120545 |
T |
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| Q |
130 |
gcttgagaacatgttatacggattccgc--------acc---agca-aacactttttctctttacttcttccggttgccgaagttccatgcgggtttgat |
217 |
Q |
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|||| |||||||||||||| |||||||| ||| || || ||||||| |||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
16120544 |
gcttaagaacatgttatacagattccgctttggtgaaccttttccagaatactttttatcttta---cttccagttgccgaagttccatgggggtttgat |
16120448 |
T |
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| Q |
218 |
ttcttcacaacggaggcttcaatcattattcctcctattccaaaagatggatcgtatcatattgtt |
283 |
Q |
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| T |
16120447 |
ttcttcacaacggaggcttcaatcattattcctcctattccaaaagatggattgaatcaaattgtt |
16120382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 16338520 - 16338650
Alignment:
| Q |
30 |
gcataaaccttaattcactaccaaagcttcctgcatccttgcaaaacttgagcgccattaactgcactaatctggacacaaactccattcaaagagaaat |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16338520 |
gcataaaccttaattcactaccaaagcttcctgcatccttggaagagttgagcgccattaactgcacatatctggacacaaactccattcaaagagaaat |
16338619 |
T |
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| Q |
130 |
gcttgagaacatgttatacggattccgcacc |
160 |
Q |
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| T |
16338620 |
gcttgagaacatgttatacagattacgcacc |
16338650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 16338689 - 16338803
Alignment:
| Q |
169 |
ctttttctctttacttcttccggttgccgaagttccatgcgggtttgatttcttcacaacggaggcttcaatcattattcctcctattccaaaagatgga |
268 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
16338689 |
ctttttcaatttacttcttccggttgccgaagttccatgcgggtttgatttcttcacaacggaggcttcaatcattattcctcctatttcaaaatatgaa |
16338788 |
T |
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| Q |
269 |
tcgtatcatattgtt |
283 |
Q |
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| T |
16338789 |
ttctatcatattgtt |
16338803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 12898010 - 12898104
Alignment:
| Q |
47 |
ctaccaaagcttcctgcatccttgcaaaacttgagcgccattaactgcactaatctggacacaaactccattcaaagagaaatgcttgagaacat |
141 |
Q |
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||||| |||||||||||||| |||||||| ||||| |||||||||||| | |||||||||| || ||||||||| || ||||||||||||||| |
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| T |
12898010 |
ctacctaagcttcctgcatctttgcaaaatttgagagccattaactgccattatctggacactaattccattcaacgaccaatgcttgagaacat |
12898104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 36022578 - 36022475
Alignment:
| Q |
38 |
cttaattcactaccaaagcttcctgcatccttgcaaaacttgagcgccattaactgcactaatctggacacaaactccattcaaagagaaatgcttgaga |
137 |
Q |
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||||| || |||||||||||||||||||||||| | | ||||| ||||||||||||||| ||||||||| | ||||||||| || ||||||||||| |
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| T |
36022578 |
cttaagtccctaccaaagcttcctgcatccttgacagagttgagagccattaactgcactgatctggacattgattccattcaacgaccaatgcttgaga |
36022479 |
T |
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| Q |
138 |
acat |
141 |
Q |
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|||| |
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| T |
36022478 |
acat |
36022475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 23401045 - 23401013
Alignment:
| Q |
230 |
gaggcttcaatcattattcctcctattccaaaa |
262 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
23401045 |
gaggcttcaataattattcctcctattccaaaa |
23401013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 23467773 - 23467741
Alignment:
| Q |
230 |
gaggcttcaatcattattcctcctattccaaaa |
262 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
23467773 |
gaggcttcaataattattcctcctattccaaaa |
23467741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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