View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_25 (Length: 274)
Name: NF1361_low_25
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 2489672 - 2489941
Alignment:
| Q |
1 |
tgcaccaatacgaaaagttgcacccaaatccgtacttgactacctctgtttgttctacaaaaaatatatatgatttataccttcaatctgcttcacagaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489672 |
tgcaccaatacgaaaagttgcacccaaatccttacttgactacctctgtttgttctacaaaaaatatatatgatttataccttcaatctgcttcacagaa |
2489771 |
T |
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| Q |
101 |
tcagttcttttaacacaagcttgatagacacgatttttgtagcaggttaataaaaatcctgcattcatcagtcatcactagtgaggtatgttcagctctt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489772 |
tcagttcttttaacacaagcttgatagacacaatttctgtagcaggttaataaaaatcctgcattcatcagtcatcactagtgaggtatgttcagctctt |
2489871 |
T |
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| Q |
201 |
attctccattcatgaaactggtacctctttttcacaatgatttctatagtttggctaagaataatctacc |
270 |
Q |
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| T |
2489872 |
attctccattcatgaaactggtacctctttttcacaatgatttctatagtttggctaagaaaaatttacc |
2489941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 2524638 - 2524758
Alignment:
| Q |
134 |
tttttgtagcaggttaataaaaatcctgcattcatcagtcatcactagtgaggtatgttcagctcttattctccattcatgaaactggtacctctttttc |
233 |
Q |
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| T |
2524638 |
tttttatagcaggttaattgaaatcctgcattcatcagtcatcactagtgaggcacgttcaactcatattc------cctgcaaccggtacctcattttt |
2524731 |
T |
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| Q |
234 |
acaatgatttctatagtttggctaaga |
260 |
Q |
| |
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| T |
2524732 |
acaatgatttctatagcttggctaaga |
2524758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 2533195 - 2533277
Alignment:
| Q |
172 |
tcatcactagtgaggtatgttcagctcttattctccatt-catgaaactggtacctctttttcacaatgatttctatagtttg |
253 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| | || || ||||||||||| ||| ||||||||||||||||||| |
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| T |
2533195 |
tcatcacttgtgaggcatgttcagctcttattctccattccctgcaagtggtacctcttattcgcaatgatttctatagtttg |
2533277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 2533064 - 2533110
Alignment:
| Q |
80 |
ccttcaatctgcttcacagaatcagttcttttaacacaagcttgata |
126 |
Q |
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| T |
2533064 |
ccttcaatttgcttcacagaatcagttcttttaacacaagcttgata |
2533110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 5095642 - 5095521
Alignment:
| Q |
7 |
aatacgaaaagttgcacccaaatccgtacttgactacctctgtttgttctacaaaaaatatatatgatttataccttcaatctgcttcacagaatcagtt |
106 |
Q |
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|||| ||| ||||||||| ||||| |||||||||||||||| |||||||| ||| ||| ||| |||| || |||||||||||| ||||||| | ||||| |
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| T |
5095642 |
aatatgaacagttgcaccaaaatctgtacttgactacctctatttgttcttcaagaaa-atacatgagttttaccttcaatctacttcacaacaccagtt |
5095544 |
T |
|
| Q |
107 |
cttttaacacaagcttgatagac |
129 |
Q |
| |
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| ||| |||| | |||||||||| |
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| T |
5095543 |
cctttgacactatcttgatagac |
5095521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 2364415 - 2364360
Alignment:
| Q |
70 |
atgatttataccttcaatctgcttcacagaatcagttcttttaacacaagcttgat |
125 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||| |
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| T |
2364415 |
atgatttataccttcaatctgctacacagaaccagttcttctaacacttgcttgat |
2364360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 2517788 - 2517842
Alignment:
| Q |
192 |
tcagctcttattctccattca-tgaaactggtacctctttttcacaatgatttct |
245 |
Q |
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|||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
2517788 |
tcagctcttattttccattccctgcaactggtacctctttttcacaatgatttct |
2517842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 2533021 - 2533057
Alignment:
| Q |
12 |
gaaaagttgcacccaaatccgtacttgactacctctg |
48 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
2533021 |
gaaaagatgcacccaaatccgtacttgactacctctg |
2533057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 39536808 - 39536711
Alignment:
| Q |
28 |
atccgtacttgactacctctgttt-gttctacaaaaaatatatatgatttataccttcaatctgcttcacagaatcagttcttttaacacaagcttgat |
125 |
Q |
| |
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|||| ||||||||||||||| ||| | ||||||| || ||| |||||||||||||||||| ||||| | |||| |||| ||| |||||| |||||||| |
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| T |
39536808 |
atccatacttgactacctctattttgatctacaagtaa-atacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgat |
39536711 |
T |
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