View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_low_27 (Length: 268)
Name: NF1361_low_27
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 21019805 - 21019613
Alignment:
| Q |
47 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgact |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21019805 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgactatgtatattgattctgttgttgtagaacgtaatgact |
21019706 |
T |
|
| Q |
147 |
ctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctccta |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21019705 |
ctcaacctccgcttgactggacaatgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctccta |
21019613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 1435752 - 1435937
Alignment:
| Q |
47 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgact |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1435752 |
caaattaatgctcttaatgttgaatttcaaaagttccagtttcaaactaa---aaccgcgtctatgtatattgattctgttgttgtagaacgtaatggct |
1435848 |
T |
|
| Q |
147 |
ctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccct |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1435849 |
ctcaacctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccct |
1435937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 1448632 - 1448760
Alignment:
| Q |
107 |
tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga |
206 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| || ||| ||||||||||| |
|
|
| T |
1448632 |
tctatgtatattgattgtgtttttgtagaacgtaatgactctcaaccgccgcttgactggccaatgcggaagaatattgcgctaggagctgccagggggc |
1448731 |
T |
|
| Q |
207 |
ttgcttacttgcattatagttgtgaccct |
235 |
Q |
| |
|
|||||||||||||| || |||||||||| |
|
|
| T |
1448732 |
ttgcttacttgcatgatcattgtgaccct |
1448760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 1441253 - 1441356
Alignment:
| Q |
132 |
tagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtga |
231 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||| |||||| |||||||||||| |||||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
1441253 |
tagaacgtaatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtga |
1441352 |
T |
|
| Q |
232 |
ccct |
235 |
Q |
| |
|
|||| |
|
|
| T |
1441353 |
ccct |
1441356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 1455348 - 1455501
Alignment:
| Q |
64 |
tgttgaatttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgac |
163 |
Q |
| |
|
||||||||||||||| || |||||||| || || ||| | |||||||||||| || |||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
1455348 |
tgttgaatttcaaaatttgcagtttca---tattataactccatctatgtatattctttttgttgttgtagaacgtaatgcctctcaaccgccacttgat |
1455444 |
T |
|
| Q |
164 |
tggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcat |
220 |
Q |
| |
|
||| ||||| ||||||||||| |||||| |||||| |||| | |||||||||||| |
|
|
| T |
1455445 |
tggccaatgaggaagaatattgggctgggagctgccaaggggctggcttacttgcat |
1455501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 1429207 - 1429312
Alignment:
| Q |
115 |
tattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttac |
214 |
Q |
| |
|
|||||||| || ||||||||||||||| || | | || |||||||| ||| |||||| ||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1429207 |
tattgattttgatgttgtagaacgtaacgaggttgatccgccgcttgagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttac |
1429306 |
T |
|
| Q |
215 |
ttgcat |
220 |
Q |
| |
|
|||||| |
|
|
| T |
1429307 |
ttgcat |
1429312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University