View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1361_low_28 (Length: 265)
Name: NF1361_low_28
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_28 |
 | |
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| [»] chr3 (31 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0640 (1 HSPs) |
| |
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| [»] scaffold2156 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 19399440 - 19399176
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19399440 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
19399341 |
T |
|
| Q |
101 |
ccatttgcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399340 |
ccatttgcagagtctgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
19399241 |
T |
|
| Q |
201 |
ttcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399240 |
ttcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
19399176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 18103162 - 18102898
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||| |
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|
| T |
18103162 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaactaaggttgagatattttaaggaagaaagtggagaaagccagtgaagactat |
18103063 |
T |
|
| Q |
101 |
ccatttgcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
200 |
Q |
| |
|
|||| |||||| || ||||||| |||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
18103062 |
ccatgtgcagaataggatagttgtaggataagtcaaggtagacaagtttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaa |
18102963 |
T |
|
| Q |
201 |
ttcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| |||| ||||||||||||||| |||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
18102962 |
atgattccagctcaaatccaagtaattgagaaactcaagtccaagaatacaaagattcatatcac |
18102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 19436590 - 19436336
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||| |
|
|
| T |
19436590 |
cttgaaaccagttggtttccttatgaagatcaatttcagtaaggttgagatattttaaggaagaaagggaagaaagccaatcaagattattcatgtgcag |
19436491 |
T |
|
| Q |
111 |
agtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctca |
210 |
Q |
| |
|
| || ||||||| | || ||||||| || | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| || |
|
|
| T |
19436490 |
aataggatagttgtacgataagtcaaggtagagaagtttagatgaatgtgtgatattgtgttgaatggatgaaattcttatcacatcaaaatcattcaca |
19436391 |
T |
|
| Q |
211 |
ctcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19436390 |
ctcaaatccaagtaactaagaaactcaagttttagaatacaaagattcatctcac |
19436336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 18146549 - 18146286
Alignment:
| Q |
5 |
ttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18146549 |
ttactacttgaaaccagttggtttccttgtgaagatcaatctcactaagggagagatatttcaaggaagaaagtggagaaagccaatgaagattatgcat |
18146450 |
T |
|
| Q |
105 |
ttgcagagtatga---tagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaat |
201 |
Q |
| |
|
||||||||| || ||||| |||| ||||||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18146449 |
gtgcagagtaggaccgtagttaaaggataagtcaaggtacaaaaggttagatatatgtgtgatattgtgttgaatggatggaattcttatcatatcaaaa |
18146350 |
T |
|
| Q |
202 |
tcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| ||| |||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
18146349 |
taattatcactcaaatccaagtaattaagaaactcaagttcaagaatacaaagattcatctcac |
18146286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 18143959 - 18143710
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18143959 |
actatttgaagccaattggtttccttatgaagatcaattccactgaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatac |
18143860 |
T |
|
| Q |
107 |
gcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcatt |
206 |
Q |
| |
|
|||| | || | |||| ||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
18143859 |
c---agtaacaaagctgtaggataagtcaaggtagacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcatatcaaaatcatt |
18143763 |
T |
|
| Q |
207 |
ctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattca |
259 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
18143762 |
gaatctcaaatccaagtaactaagaaactcaagttctagaatacaaagattca |
18143710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 18164879 - 18164618
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
||||| ||| |||||| ||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18164879 |
gtactcactgcttgaatccaattggtttccttatgaagatcaataaaactaaggttgagatatttcaaggaagaaagtggagaaagccaatcaagattat |
18164780 |
T |
|
| Q |
101 |
ccatttgcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
200 |
Q |
| |
|
|||| |||| || | ||| ||||||| || |||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||| |
|
|
| T |
18164779 |
ccatact---agtaattaagctgttggataagtcaaggtagacaagtttagatgaatgtgtgaagttgtgttgaattgatgtaattcttatcacatcaaa |
18164683 |
T |
|
| Q |
201 |
ttcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18164682 |
atcattaagactcaaatccaagtgactgagaaactcaagttctagaatacaaagattcatctcac |
18164618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 19380619 - 19380361
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19380619 |
actacttgaaaccaattattttccttatgaagataaattccatcgaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatgt |
19380520 |
T |
|
| Q |
107 |
gcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcatt |
206 |
Q |
| |
|
|||||| | ||| ||| ||||||| || | ||| ||||||||||||| || || |||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
19380519 |
gcagaggaccatataagtgggataagtcaaggtgcaaaaggatagatgaatgtgtaatgttttgttgaatggatggaattcttatcacatcaaaattatt |
19380420 |
T |
|
| Q |
207 |
ctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
19380419 |
ttcactcaaatccaagtaactaagaaacttaagttcaagaatacaaagattcatctcac |
19380361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 19419684 - 19419451
Alignment:
| Q |
26 |
tttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcagagtatgatagttcca |
125 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||| | |
|
|
| T |
19419684 |
tttccttatgaagatcaattccaccgaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatacatgtgaagaa------agttgaa |
19419591 |
T |
|
| Q |
126 |
ggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaa |
225 |
Q |
| |
|
||| ||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
19419590 |
ggataagtcaagtttcacaaggttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaa |
19419491 |
T |
|
| Q |
226 |
ctgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|| |||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
19419490 |
ctaagaaactcaagttcaaaaatacaaagattcatctcac |
19419451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 17941460 - 17941200
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||| ||| || ||||||| |||||||||||| | | ||||| ||||||||| |||| ||||| |||||||||||||| |||||||||||| || || |
|
|
| T |
17941460 |
cttgaagccaattagtttcctcatgaagatcaatgccactaaggcggagatatttcaaggtagaaaatggagaaagccaatgaagattatccatgtgaag |
17941361 |
T |
|
| Q |
111 |
agtatgat---agttccaggag---aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattca |
204 |
Q |
| |
|
||||| || | || ||||| |||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
17941360 |
agtattatcaaaattgaaggaggataagttaaggtggacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaattta |
17941261 |
T |
|
| Q |
205 |
ttctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17941260 |
ttatcactcaaatccaaataactgagaaactcaagttcaagaatacaaagattcatctcac |
17941200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 18022517 - 18022264
Alignment:
| Q |
9 |
tacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | | |||| ||||||||| ||||||||||||| ||||||||| ||||||||||| || || |
|
|
| T |
18022517 |
tacttgaaaccagttggtttccttatgaagatcaagtccactgaggtcgagatatttcaaggaagaaagtgaagaaagccagtcaagattatctatgtga |
18022418 |
T |
|
| Q |
109 |
agagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattct |
208 |
Q |
| |
|
||| || || | |||| ||||||| || | || ||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
18022417 |
agaccatcat---taaaggataagtcaaggtagaaaaatttagatgagtgtgtgatgttgtgttgaatagatggaattcttatcacatcaaattcattat |
18022321 |
T |
|
| Q |
209 |
cactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
18022320 |
gactcaaatccaaataactaagaaactcaagttcaagaatacaaagattcagctcac |
18022264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 19351120 - 19350865
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
19351120 |
actatttgaagccaattggtttccttatgaagatcaattccaccgaggttgagatattttatggaagaaagtggagaaagccaatcaagattattcatat |
19351021 |
T |
|
| Q |
107 |
gcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcatt |
206 |
Q |
| |
|
| || || | |||| ||||||| || ||||||||||| ||||||||||| || | ||||||||||||||| ||||||||| ||| | ||| |
|
|
| T |
19351020 |
c---attaactaagctgtaggataagtcaaggtagacaagtttagaggaatgtgtgatgtttttttgaatggatggaatagttatcacatcaaaatgatt |
19350924 |
T |
|
| Q |
207 |
ctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19350923 |
ctcactcaaacccaagtaactgagaaactcaagttctagaatacaaagattcatctcac |
19350865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 19375366 - 19375150
Alignment:
| Q |
52 |
aggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcagagtatga---tagttccaggagaagtcaaagtctacaagtt |
148 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| || ||||| |||| ||||||| | | ||| | |
|
|
| T |
19375366 |
aggttgagatatttcaaggaagaaagtgaagaaagccattgaagattatccatgtgcagagtaggactgtagttgaaggataagtcaaggaacaaaaggt |
19375267 |
T |
|
| Q |
149 |
tagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaat |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19375266 |
tagatgaatgtgtgaagttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagtaactgagaaactcaagttctagaat |
19375167 |
T |
|
| Q |
249 |
acagagattcatctcac |
265 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
19375166 |
ataaagattcatctcac |
19375150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 19461258 - 19460988
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||| ||| | | |||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
19461258 |
actatttgaagccaattggtttccttatgaagatgaattccactaaggtcgagatatttcaaggaagaatgtggagaaagccaaccaagattatccatgt |
19461159 |
T |
|
| Q |
107 |
gcagagta---------tgatagttccaggag---aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcac |
194 |
Q |
| |
|
| |||| | ||||| ||| | ||||||| || | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
19461158 |
gaagaggaccgtgatcatgataacggaagggggataagtcaaggtagaaaaggttagatgaatgtgtgatgttgtgttgaatggatggaaatcttatcac |
19461059 |
T |
|
| Q |
195 |
atgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19461058 |
atcaaattcattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac |
19460988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 14896667 - 14896934
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
||||| |||||||||| ||| |||| |||||| ||||||||||| | | ||||| |||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
14896667 |
gtactcactacttgaagccaattggattccttgtgaagatcaattccactaaggatgagatatttcaaggaagaatgtggagaaagccaatcaagattat |
14896766 |
T |
|
| Q |
101 |
ccatttgcagagtatga---tagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatg |
197 |
Q |
| |
|
|||| |||||| || || | ||| |||| ||||||| || | ||| |||||||||||||||| ||||||||| || |||||| |||||||||| |
|
|
| T |
14896767 |
ccatgtgcagattaggaccttcgttgaaggataagtcaaggtagaaaaggctagatgaatgtgtgatgttgtgttgagtgactggaatacttatcacatc |
14896866 |
T |
|
| Q |
198 |
aaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||| | |||| ||||||||| ||||||||||||||||| ||||| |||||||| ||| ||||||||| |
|
|
| T |
14896867 |
aaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaatacaaagactcatctcac |
14896934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 25462763 - 25462506
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||| || || |
|
|
| T |
25462763 |
cttgaagccaattagtttccttatgaagatcaattgcattgaggttgagatattttaaggaagataatggagaaagccaatgaagattatccatgtgaag |
25462664 |
T |
|
| Q |
111 |
agtatgatagtt---ccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattc |
207 |
Q |
| |
|
||| | | | | | ||| ||||||| | |||||||||||||||||||||| |||||||||| || |||||| ||||| | | ||||||||| |
|
|
| T |
25462663 |
agtgttaagggtgagcggggataagtcaagatagtcaagtttagatgaatgtgtgatgttgtgttgaaaggctggaatacttatgatgttaaattcatta |
25462564 |
T |
|
| Q |
208 |
tcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
25462563 |
tcacttaaatccaagtaactgagaaactcaagttctagaacacatagattcatctcac |
25462506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 19413895 - 19413660
Alignment:
| Q |
22 |
ttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcagagtatgatagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||| ||||||||| |||||||| || ||| | || |
|
|
| T |
19413895 |
ttggtttccttatgaagatcaatccaactaagggtgagatatttcaacgaagaaagtggataaagccaatgaagattattgat------agtgtctaagc |
19413802 |
T |
|
| Q |
122 |
tccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaa |
221 |
Q |
| |
|
| |||| ||||||| || ||||||||||||||||||||||||||||||| ||| | ||||||||||||| || ||| | ||| | ||||||||||| |
|
|
| T |
19413801 |
tgtaggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctcaccaaaataattgtggctcaaatccaa |
19413702 |
T |
|
| Q |
222 |
gtaactgagaaactcaagttctagaatacagagattcatctc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19413701 |
gtaactgagaaactcaagttctagaatacaaagattcatctc |
19413660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 17727965 - 17728224
Alignment:
| Q |
9 |
tacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgc |
108 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||| |
|
|
| T |
17727965 |
tacttgaagccaatttgtttccttatgaagatcaattccattgaggttgagatattgtaaggaagaaagtggagaaagccaatgaagactatccatgtgc |
17728064 |
T |
|
| Q |
109 |
agagtatga---tagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcat |
205 |
Q |
| |
|
||||| || | || |||| |||||| || | ||| || |||||| ||||||| ||||| |||||||||||||||||||| ||| ||||| || |
|
|
| T |
17728065 |
agagttggaccttgatttaaggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttat |
17728164 |
T |
|
| Q |
206 |
tctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17728165 |
tgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac |
17728224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 19029194 - 19029453
Alignment:
| Q |
9 |
tacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgc |
108 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||| |
|
|
| T |
19029194 |
tacttgaagccaatttgtttccttatgaagatcaattccattgaggttgagatattgtaaggaagaaagtggagaaagccaatgaagactatccatgtgc |
19029293 |
T |
|
| Q |
109 |
agagtatga---tagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcat |
205 |
Q |
| |
|
||||| || | || |||| |||||| || | ||| || |||||| ||||||| ||||| |||||||||||||||||||| ||| ||||| || |
|
|
| T |
19029294 |
agagttggaccttgatttaaggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttat |
19029393 |
T |
|
| Q |
206 |
tctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
19029394 |
tgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac |
19029453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 130 - 265
Target Start/End: Complemental strand, 19333588 - 19333453
Alignment:
| Q |
130 |
aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactga |
229 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||||| |||||||||||||| ||||||| | |||| ||||| |||||||||||||||||||| |
|
|
| T |
19333588 |
aagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactga |
19333489 |
T |
|
| Q |
230 |
gaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19333488 |
gaaactcaagttctagaatacaaagattcatctcac |
19333453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 18015820 - 18015562
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| || || ||| |||| ||||||||||| ||||||||||| | |
|
|
| T |
18015820 |
actatttgaagccaattggtttccttatgaagatcaatccaactaaggttgagatatttcaacgacgaatgtggtgaaagccaatccagattatccatgt |
18015721 |
T |
|
| Q |
107 |
gcagagtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcatt |
206 |
Q |
| |
|
| |||||| | | | ||||||| || | ||| ||||| ||||||||||| |||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
18015720 |
gaagagtaaaagtgggggggtgtaagtcaaggtagaaaaggttagaggaatgtgtgatgttgttttgaatggatggaatacttatcacatcaaattcatt |
18015621 |
T |
|
| Q |
207 |
ctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||| | ||||||||||| |
|
|
| T |
18015620 |
gaaactcaaatccaagtaactaagaaattcaagttctaaaatacaaaaattcatctcac |
18015562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 18115691 - 18115421
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||| ||| | | |||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
18115691 |
actatttgaagccaattggtttccttatgaagatgaattccactaaggtcgagatatttcaaggaagaatgtggagaaagccaaccaagattatccatgt |
18115592 |
T |
|
| Q |
107 |
gcagagta---------tgatagttccaggag---aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcac |
194 |
Q |
| |
|
| |||| | ||||| ||| | ||||||| || | ||| |||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
18115591 |
gaagaggaccgtgatcatgataacggaagggggataagtcaaggtggaaaaggttagatgaatgtgtgaggttgtgttgaatggatggaaatcttatcac |
18115492 |
T |
|
| Q |
195 |
atgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18115491 |
atcaaaatcatttgagctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac |
18115421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 24493705 - 24493942
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||| ||| |||||||||| | ||||||| || | | |||||||||||||||| || ||||||||||||| |||||||| |||||||||||| || || |
|
|
| T |
24493705 |
cttgaagccaattggtttcctcacgaagatcgattccactaaggttgagatatttcaacgaagaaagtggaggaagccaatgaagattatccatgtgaag |
24493804 |
T |
|
| Q |
111 |
agtatgatagttccaggag---aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattc |
207 |
Q |
| |
|
|||| | || | || | ||||||| || ||||||||||||||||||||||| |||| |||||||| |||||| ||||||| || ||| || || |
|
|
| T |
24493805 |
agtaccaaagctgaggggggataagtcaaggtagacaagtttagatgaatgtgtgatgttgttttgaatggttggaatacttatcaaatcaaaatcgtta |
24493904 |
T |
|
| Q |
208 |
tcactcaaatccaagtaactgagaaactcaagttctag |
245 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
24493905 |
tcgctcaagtccaagtaactaagaaactcaagttctag |
24493942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 19392715 - 19392593
Alignment:
| Q |
143 |
caagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttc |
242 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| | ||| |||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
19392715 |
caagtttagatgaatgcgtgatgttgcgttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatccaagtaacttagaaactcaagttg |
19392616 |
T |
|
| Q |
243 |
tagaatacagagattcatctcac |
265 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
19392615 |
tagaatacaaagattcatctcac |
19392593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 18108025 - 18107908
Alignment:
| Q |
148 |
ttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||||| || ||||||||||||||||| || |||| |
|
|
| T |
18108025 |
ttagatgaatgtgtgatattgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataactgagaaactcaaggtcaagaa |
18107926 |
T |
|
| Q |
248 |
tacagagattcatctcac |
265 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
18107925 |
tacaaagattcatctcac |
18107908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 16676809 - 16676669
Alignment:
| Q |
125 |
aggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagta |
224 |
Q |
| |
|
|||| ||||||| || ||||| ||||||| |||||||| || ||||||||||||||||||||||| | | |||||||||| |||||||||||||| |
|
|
| T |
16676809 |
aggataagtcaaggtagacaaggttagatgcatgtgtgaggttttgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagta |
16676710 |
T |
|
| Q |
225 |
actgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16676709 |
aattagaaactcaagttctagaatacaaagattcatctcac |
16676669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 19333735 - 19333629
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||| ||||||| | |||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |
|
|
| T |
19333735 |
actatttgaaacaaattggtttccttaggaagatcaatgttactaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagactatccatgt |
19333636 |
T |
|
| Q |
107 |
gcagagt |
113 |
Q |
| |
|
||||||| |
|
|
| T |
19333635 |
gcagagt |
19333629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 17949545 - 17949437
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttat-gaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatt |
105 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||| | | ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17949545 |
actacttgaaaccaattattttccttattgaagatcaattccaccgaggttgagataatttaaggaagaaagtggagaaagccaatgaagattatccatg |
17949446 |
T |
|
| Q |
106 |
tgcagagta |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
17949445 |
tgcagagta |
17949437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 19392871 - 19392766
Alignment:
| Q |
2 |
tacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatc |
101 |
Q |
| |
|
|||| ||| |||||| ||| ||||||||||||||||||||||| | | | ||| ||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
19392871 |
tactcactgcttgaagccaattggtttccttatgaagatcaattccacttaggaagagatatttcaatgaagaaagtggagaaagccaatcaagactatc |
19392772 |
T |
|
| Q |
102 |
catttg |
107 |
Q |
| |
|
|||||| |
|
|
| T |
19392771 |
catttg |
19392766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 18108156 - 18108067
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaaga |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| ||||||||| ||| ||||||||||| |||| |
|
|
| T |
18108156 |
actacttgaaaccagttggtttccttatgaagatcaactccaccaaggctgagatatttcaaggaagaatgtgaagaaagccaatgaaga |
18108067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 16676930 - 16676839
Alignment:
| Q |
13 |
tgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccat |
104 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| | | |||||| |||||| || |||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
16676930 |
tgaatccaattggtttccttatgaagatcaagtccactaaggtcgagatacttcaaggaagaaagtataaaaagccaatgaagattatccat |
16676839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 19424270 - 19424236
Alignment:
| Q |
70 |
gaagaaagtggagaaagccaatcaagattatccat |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
19424270 |
gaagaaagtgaagaaagccaatcaagattatccat |
19424236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 15532073 - 15531819
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
15532073 |
cttgaatccagttggtttccttatgaagatcaatccaattaaggttgagatatttcaaggatgaaagtggagaaagccaatcaagattatccatgtgaag |
15531974 |
T |
|
| Q |
111 |
agtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattg---tgttgaatggatggaattcttatcacatgaaattcattc |
207 |
Q |
| |
|
| | | || |||| ||||||| || | ||| ||||||||||||||||||||| | ||||||||||||||| |||| ||||| ||| |||||| |
|
|
| T |
15531973 |
accacca---tttaaggataagtcaaggtacaaaaggttagatgaatgtgtgatattgttattttgaatggatggaatgcttagcacatcaaaatcattc |
15531877 |
T |
|
| Q |
208 |
tcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
15531876 |
cgactcaaatcgaagtaactaagaaactcaagttttagaatacaaagattcatctcac |
15531819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 2710859 - 2710953
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatc |
101 |
Q |
| |
|
|||| ||||| ||| |||||||| |||||||||||||| | | |||||||||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
2710859 |
actatttgaagccaattggtttctttatgaagatcaataccgctgaggttgagatatttcaaagaagaaagtggagaaagccaattaagattatc |
2710953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 2711012 - 2711064
Alignment:
| Q |
148 |
ttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
200 |
Q |
| |
|
||||||| ||||||||| |||||||||| || |||||| ||||||||||||| |
|
|
| T |
2711012 |
ttagatgcatgtgtgatgttgtgttgaacgggtggaatagttatcacatgaaa |
2711064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5126 - 4856
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||| | ||||| |||||||||| ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
5126 |
gtacttactgcttgaagccagttggtttccttacgaagatcaatcccactaaggatgagatatttcaaggatgaaagtgaagaaagccaatgaagattat |
5027 |
T |
|
| Q |
101 |
ccatttgcagagtatgat--agttccaggag----aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcac |
194 |
Q |
| |
|
|||| || ||||| | || | ||| | ||||||| || ||||||||||||||| ||||||| ||||||||| || ||||| |||||| || |
|
|
| T |
5026 |
ccatgtgaagagttttatcaaaaatgaggggggctaagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataac |
4927 |
T |
|
| Q |
195 |
atgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| ||| ||||| | ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4926 |
gtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcac |
4856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 13667154 - 13667415
Alignment:
| Q |
7 |
actacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccattt |
106 |
Q |
| |
|
|||||||| | ||| || |||||||||||||||||||| | ||||| ||||||||| |||||||||| |||||||| ||||| ||||||||| || | |
|
|
| T |
13667154 |
actacttggagccaattagtttccttatgaagatcaatgccattaaaccggagatatttcaaggaagaaaatggagaaaaccaatgaagattatcaatgt |
13667253 |
T |
|
| Q |
107 |
gcagagtatgat---agttccaggag---aagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaa |
200 |
Q |
| |
|
| ||| ||| || | || ||| | ||||||| || |||||||||||||||| |||||| |||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
13667254 |
gaagaatattatcaaaattgtaggcggataagtcaaggtagacaagtttagatgaatttgtgatgttgtgttgaatggatgaaatttttatcacatcaaa |
13667353 |
T |
|
| Q |
201 |
ttcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatct |
262 |
Q |
| |
|
|||||| | |||||||||||| || |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
13667354 |
ttcattatgactcaaatccaaatagctgagaaacttaagttctagaatacaaagattcatct |
13667415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 2509680 - 2509634
Alignment:
| Q |
51 |
aaggttgagatattttaaggaagaaagtggagaaagccaatcaagat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2509680 |
aaggttgagatattttaaggaagaaagtggagaaagccaatgaagat |
2509634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 205 - 474
Alignment:
| Q |
1 |
gtacttactacttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattat |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||| | ||||| ||||||| |||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
205 |
gtacttactgcttgaagccagttggtttccttacgaagatcaatcccaataaggatgagata-tttaaggatgaaagtgaagaaagccaatgaagattat |
303 |
T |
|
| Q |
101 |
ccatttgcagagtatgat------agttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcac |
194 |
Q |
| |
|
|||| || ||||| | || | ||| ||||||| || ||||||||||||||| ||||||| ||||||||| || ||||| |||||| || |
|
|
| T |
304 |
ccatgtgaagagttttatcaaaaatgaggggggataagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataac |
403 |
T |
|
| Q |
195 |
atgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcac |
265 |
Q |
| |
|
| ||| ||||| | ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
404 |
gtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcac |
474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 8459192 - 8458958
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcag |
110 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||| | |||||||| || || |
|
|
| T |
8459192 |
cttgaagccaattagtttccttatgaagatcaattccattgaggttgagattttttaaggaagaaagtggagaaagccattgaagattattca-aagc-- |
8459096 |
T |
|
| Q |
111 |
agtatgatagttccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctca |
210 |
Q |
| |
|
|||| | | |||| ||||||| || | ||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||| || |
|
|
| T |
8459095 |
agtaactacggtgtaggataagtcaaggtgcaaaaggttagatgcatgtgtgatgttgtgttgaatcgatggaattcttatcacatcaaatttatgtaag |
8458996 |
T |
|
| Q |
211 |
ctcaaatccaagtaactgagaaactcaagttctagaat |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8458995 |
ctcaaatccaagtaactcagaaactcaagttctagaat |
8458958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 16436109 - 16436016
Alignment:
| Q |
11 |
cttgaaaccagttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccat |
104 |
Q |
| |
|
|||||| ||| |||||| |||| | ||||||||||| | | ||||| ||||||||| | |||||| |||||||| ||| |||||||||||||| |
|
|
| T |
16436109 |
cttgaagccaattggttgccttgttaagatcaatcccactgaggtttagatattttcaacaagaaaatggagaaacccagtcaagattatccat |
16436016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 16436747 - 16436795
Alignment:
| Q |
55 |
ttgagatattttaaggaagaaagtggagaaagccaatcaagattatcca |
103 |
Q |
| |
|
||||||||||||||| |||||| || ||||| ||| ||||||||||||| |
|
|
| T |
16436747 |
ttgagatattttaagcaagaaaatgtagaaacccagtcaagattatcca |
16436795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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