View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1361_low_8 (Length: 451)
Name: NF1361_low_8
Description: NF1361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1361_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 123 - 354
Target Start/End: Complemental strand, 31253478 - 31253247
Alignment:
| Q |
123 |
acaatattttcatgcaatatgtgtcgatgggcagggggaaaaacagctttgcaagatccctaactattttcattcatttgtaagattcatctttaacaat |
222 |
Q |
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| T |
31253478 |
acaatattttcatgcaatatgtgtcgatgggcagggggaaaaacagctttgcaagatccctaactattttcattcatttgtaagattcatctttaacaat |
31253379 |
T |
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| Q |
223 |
atcttgttgcaagtttcattttcttggcaatttacagcttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactat |
322 |
Q |
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| T |
31253378 |
atcttgttacaagtttcattttcttggcaatttacagcttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactat |
31253279 |
T |
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| Q |
323 |
cactctaaatggaaaataactaacacacttta |
354 |
Q |
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| T |
31253278 |
cactctaaatggaaaataactaacacacttta |
31253247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 125 - 354
Target Start/End: Original strand, 13002109 - 13002339
Alignment:
| Q |
125 |
aatattttcatgcaatatgtgtcgatgggcagggg-gaaaaacagctttgcaagatccctaactattttcattcatttgtaagattcatctttaacaata |
223 |
Q |
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| T |
13002109 |
aatattttcatgcaatatgtgtcgatgggcaggggggaaaaacagctttacaagatccctaactattttcattcatttgtaagattcatcattaacaata |
13002208 |
T |
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| Q |
224 |
tcttgttgcaagtttcattttcttggcaatttacagcttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactatc |
323 |
Q |
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| T |
13002209 |
tcttgttgcaagtttcattttcttggcaatttacagcttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactatc |
13002308 |
T |
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| Q |
324 |
actctaaatggaaaataactaacacacttta |
354 |
Q |
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| T |
13002309 |
actttaaatggaaaataacttacacacttta |
13002339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 31249611 - 31249452
Alignment:
| Q |
200 |
ttgtaagattcatctttaacaatatcttgttgcaagtttcattttcttggcaat-ttacagcttgcaagtctaacat---tagacactgctccatgacac |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||| || | |||||||||||||| | ||| |
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| T |
31249611 |
ttgtaagattcatctttaacaatatcttgttgcaagtttcattttcttagcaatatcacagcttgcaaatcttacttacatagacactgctccacggcac |
31249512 |
T |
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| Q |
296 |
tatagt-caaagacacaaaacaaactatcactctaaatggaaaataactaacacacttta |
354 |
Q |
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| T |
31249511 |
cacagtccacatgcacaaaacaaactatcaatataaatggaaaataactaacacacttta |
31249452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 31253585 - 31253517
Alignment:
| Q |
16 |
atgaataacattatatgtatgcaagcacaccattttgcagctagaagtctcttactagtgtctgacaac |
84 |
Q |
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| T |
31253585 |
atgaataacattatatgtatgcaagcacaccattttgcagctagaagtctcttactagtgtctgacaac |
31253517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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