View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362-INSERTION-3 (Length: 430)
Name: NF1362-INSERTION-3
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362-INSERTION-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 3598429 - 3598859
Alignment:
| Q |
7 |
aaattaatcaaataaaaagcacgtaattatcagcaattattctgcattgagtaatgttaatagattaagacttactctaaatcttctagcgtcgcatcca |
106 |
Q |
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| T |
3598429 |
aaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaatagattaagacttactctaaatcttctagcgtcgcatcca |
3598528 |
T |
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| Q |
107 |
tagccttgctgannnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataaccagtaacatctaaaaatatgaattttttccaagtatatg |
206 |
Q |
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| T |
3598529 |
tagccttgctgatttttttcatttttttcagtttccgtgacagtgtctttctcaacataaccagtaacatctaaaaatatgaattttttccaagtatatg |
3598628 |
T |
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| Q |
207 |
tgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaac------tacaatcctccttagagcatcctaaaatctctagaaaagg |
300 |
Q |
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| T |
3598629 |
tgagaaatgaactaacaactcatgaaaataaactattcaaaagagaagagtaaccaagtatccaatcctccttagagcatcctaaaatctctagaaaagg |
3598728 |
T |
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| Q |
301 |
attaataatttaggacaataattattaaggccttccgcaatttgtgtttctaaagctgcagcaagcc-nnnnnnnncttcagcaatctcgatcaacacac |
399 |
Q |
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| T |
3598729 |
attaataatttaggacaataattattaaggccatctgcaatttgtgtttctaaagctgcagcaagcctttttttttcttcagcaatctcgatcaacacac |
3598828 |
T |
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| Q |
400 |
aatatagagagggtagacacaatcacatcag |
430 |
Q |
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| T |
3598829 |
aatatagagagggtagacacagtcacatcag |
3598859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 4356597 - 4356335
Alignment:
| Q |
6 |
caaattaatcaaataaaaag----cacgtaattatcagcaattattctgcattgagtaatgttaatagattaagacttactctaaatcttctagcgtcgc |
101 |
Q |
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|||||||||||||| ||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
4356597 |
caaattaatcaaattaaaagttagcacataattatcaacaattgttctgcattgagtaatgttaatagattaagacttgctctaaatcttctagcgtcac |
4356498 |
T |
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| Q |
102 |
atccatagccttgctgannnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaa |
199 |
Q |
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| T |
4356497 |
aaccgtagccttgctgatttttccattttttttcagtttccttgacagtgtctttctcaacatgaccaataacatcttaaaatatgatttcattttccaa |
4356398 |
T |
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| Q |
200 |
gtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta |
262 |
Q |
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| T |
4356397 |
gtatatatgagaaatgaactaacaactcctgaaaataaacaattcaaaagagaagagtaacta |
4356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 45221399 - 45221519
Alignment:
| Q |
144 |
tgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatcta |
241 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| | | |
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| T |
45221399 |
tgacagtgtctttctcaacatgaccaataacatctaaaaatatgatttcattttccaagtatatatgagaaatgaactaaaaactcatgaaaataaacaa |
45221498 |
T |
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| Q |
242 |
ttcaaaagagaagagtaacta |
262 |
Q |
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| T |
45221499 |
ttcaaaagagaagagtaacta |
45221519 |
T |
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