View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362-INSERTION-4 (Length: 568)
Name: NF1362-INSERTION-4
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362-INSERTION-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 7740378 - 7739832
Alignment:
| Q |
8 |
gattttgaagtgataaatgttgtgtgctttaaattttgttaatgattgaattnnnnnnntgtgattacggatgattttactgtagcaccgacacttctga |
107 |
Q |
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| T |
7740378 |
gattttgaagtgataaatgttgtgtgctttaaattttgttaatgattgaattcaaaaa-tgggattacggatgattttactgtagcaccaacacttctaa |
7740280 |
T |
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| Q |
108 |
tggaaggcgtttctggtgttacaccaacacgacagtaacccatgtaactacattgatttaattcgttttttcaaatttttaccggtgttgaagtgtcggt |
207 |
Q |
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| T |
7740279 |
tggaaggcgtt---------acaccaacacgacactgacccatgtaactacattgatttaattcgttttttcaaatttttaccggtgttgaagtgtcggt |
7740189 |
T |
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| Q |
208 |
gtaatgtcaagtgtccgtctctgtgtcggtgcttcttatggttttagtttcannnnnnnggtgaacccgtatattgagagtgatttgagctgtatttgtt |
307 |
Q |
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| T |
7740188 |
gtaatgtcaagtgtccgtctctgtgtcggtgcttcttatggttttagtttcatttttttggtgaacccgtatattgagagtgatttgagctgtatttgtt |
7740089 |
T |
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| Q |
308 |
tagagttgttttaaatcgaggatgccgttacactaaaaacatttatgttgtggttaaatgcagctgcaatttctgttaaagtcgttgccgagacatctaa |
407 |
Q |
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| T |
7740088 |
tagagttgttttaaatcgaggatgccgttacactaaaaacatttatgttgtggttaaatgcagctgcaatttctgttaaagtcgttgccgagacatctaa |
7739989 |
T |
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| Q |
408 |
aaccattgcttacaactataataatacaattaattatgtattctctttgaccctgattttattggcatgtattcattaattaaatgcttctacatgtgcg |
507 |
Q |
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| T |
7739988 |
aaccattgcttacaactataataatacaattaattatgtattctctttgaccctgattttattggcatgtattcattaattaaatgcttctacatgtgcg |
7739889 |
T |
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| Q |
508 |
cgtgagtgtcggtatgtacttatgtatgtaataaatgcttctagatgtgcccgtgtgtttc |
568 |
Q |
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| T |
7739888 |
cgtgtgtgtcggtatg----tatgtatgtaataaatgcttctacatgtgcgagtgtgtttc |
7739832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 14782798 - 14782837
Alignment:
| Q |
87 |
ctgtagcaccgacacttctgatggaaggcgtttctggtgt |
126 |
Q |
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| T |
14782798 |
ctgtagcaccgacacttctgatggaaagcgtgtctggtgt |
14782837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 23921631 - 23921587
Alignment:
| Q |
165 |
ttaattcgttttttcaaatttttaccggtgttgaagtgtcggtgt |
209 |
Q |
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| T |
23921631 |
ttaattcattttttcaaatttttaccggtgttgatgtgtcagtgt |
23921587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 28173082 - 28173145
Alignment:
| Q |
134 |
acacgacagtaacccatgtaactacattgatttaattcgttttttcaaatttttaccggtgttg |
197 |
Q |
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| T |
28173082 |
acacgacactgacacatgtaactgcattcaattaattcattttttcaaatttttacctgtgttg |
28173145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 12478379 - 12478341
Alignment:
| Q |
88 |
tgtagcaccgacacttctgatggaaggcgtttctggtgt |
126 |
Q |
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| T |
12478379 |
tgtagcaccgacatttctgatggaaggcgtgtctggtgt |
12478341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 10970991 - 10971027
Alignment:
| Q |
90 |
tagcaccgacacttctgatggaaggcgtttctggtgt |
126 |
Q |
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| T |
10970991 |
tagcaccgacacttctgattgaaggcgtatctggtgt |
10971027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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