View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13620_low_1 (Length: 640)
Name: NF13620_low_1
Description: NF13620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13620_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 3745108 - 3744891
Alignment:
| Q |
22 |
tttcctctgtcgtagaggaataaacggcaccgttttgatcacgcctcttgctacccgaagaagccatatacggttgtgactctaaaccctaaaaccttaa |
121 |
Q |
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| T |
3745108 |
tttcctctgtcgtagaggaataaacagcaccgttttgatcacgcctcttgctaccccaagaagccatattcagttgtgactctaaaccctaaaaccttaa |
3745009 |
T |
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| Q |
122 |
acctaatgaatgcaata--tatagaaggctgatatatctgattatnnnnnnnnnnnnnnnnnnnnnnngggctagtaacgagtgtttttgttttatgtta |
219 |
Q |
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| T |
3745008 |
acctaacgaatgcaatatatatagaaggctgatatatctgattataaaaaataaaaataaaaataaaagggctagtaacgagtgtttttgttttatgtta |
3744909 |
T |
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| Q |
220 |
tcttcgcatatctttctt |
237 |
Q |
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| T |
3744908 |
tcttcgcatatctttctt |
3744891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 400 - 594
Target Start/End: Complemental strand, 3744846 - 3744654
Alignment:
| Q |
400 |
ttattcaataataataactttaatattttga--------catatacaacaatgacatgtagtttgatgaaaaatagttaatatcagttaatatcaactgt |
491 |
Q |
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| T |
3744846 |
ttattcaataataataactttaatattttgaatatttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatatca----------actgt |
3744757 |
T |
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| Q |
492 |
gacatccgtaaccattttctaagcagattttctaaagttcgaaaccaaacgtnnnnnnnnnnnnntacaatgggtagagagagagctatctatctattta |
591 |
Q |
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| T |
3744756 |
gacatccgtaaccattttctaagcagattttctaaagtttgaaaccaaacgtaaaaaataaaaaatacaatgggtagagagagagctatctatctattta |
3744657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 588 - 631
Target Start/End: Complemental strand, 3734450 - 3734407
Alignment:
| Q |
588 |
tttatatacaaacttgagctatatattctaagttctgatgatgt |
631 |
Q |
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| T |
3734450 |
tttatatacaaacttgagctatatattctaagttatgatgatgt |
3734407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 3753681 - 3753645
Alignment:
| Q |
108 |
ccctaaaaccttaaacctaatgaatgcaatatataga |
144 |
Q |
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| T |
3753681 |
ccctaaaatcttaaacctagtgaatgcaatatataga |
3753645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 23976449 - 23976514
Alignment:
| Q |
409 |
aataataactttaatattttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatat |
474 |
Q |
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| T |
23976449 |
aataatgactttcatattttgacatatacaacactaacatgtagtttagcgaataatagttaatat |
23976514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 11372361 - 11372315
Alignment:
| Q |
409 |
aataataactttaatattttgacatatacaacaatgacatgtagttt |
455 |
Q |
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| T |
11372361 |
aataatgacttttatattttgacatatacaacattaacatgtagttt |
11372315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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