View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13620_low_2 (Length: 479)
Name: NF13620_low_2
Description: NF13620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13620_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 33029848 - 33030291
Alignment:
| Q |
10 |
aagaatatgacaaagttcaaccctgctgtccttttggcggttaataacaacttatcaggttcattcgccgctatacaattacaagaaaaccaaaaaagag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33029848 |
aagaatatgacaaagttcaaccctgctgtccttttggcggttaataacaacttatcaggttcattcgccgctatacaattacaagaaaaccaaaaaagag |
33029947 |
T |
|
| Q |
110 |
atgcttaaacacttagatcatgagatgcnnnnnnnnnnnnnnnngagagagaaaaattgtcgatgaatgaaagcttgaagagtaacttaaaaatcacaat |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33029948 |
atgcttaaacacttagctcatgagatgcaaaaaaataaa-----gagagagaaaaattgtcgatgaatgaaagcttgaagagtaacttaaaaatcacaat |
33030042 |
T |
|
| Q |
210 |
ctgaatgacaataaataaataataaaactcataactttagagcaagtttgttgaaattcaacattcactgtcatggatgcaagcttgaagagtaactcaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33030043 |
ctgaatgacaataaataaataataaaactcataactttagagcaagtt-gttgaaattcaacattcactgtcatggatgcaagcttgaagagtaactcaa |
33030141 |
T |
|
| Q |
310 |
agatgaaaaacttgaaaattgatgttcattgtcttagaaaaagagatggaatgttggagcaaccgaatacttacatggccccaaacctaagtacaactga |
409 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33030142 |
agatgagaaatttgaaaattgatgttcattgtcttagaaaaagagatggaatgttggagcaaccgaatacttacatggccccaaacctaagtacaactga |
33030241 |
T |
|
| Q |
410 |
aatgtttgaagtgatgattctctcattttgttcctccgaataaagcactg |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33030242 |
aatgtttgaagtgatgattctctcattttgttcctccgaataaagcactg |
33030291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 239 - 406
Target Start/End: Original strand, 33040671 - 33040836
Alignment:
| Q |
239 |
cataactttagagcaagtttgttgaaattcaacattcactgtcatggatgcaagcttgaagagtaactcaaagatgaaaaacttgaaaattgatgttcat |
338 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| |||||||||||| ||||| |
|
|
| T |
33040671 |
cataaatttagagcaagtaagttgaaattcaacattagtagtcatgaatgcaagcttgaagagtaactaaaa--tgaaaaatttgaaaattgatattcat |
33040768 |
T |
|
| Q |
339 |
tgtcttagaaaaagagatggaatgttggagcaaccgaatacttacatggccccaaacctaagtacaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
33040769 |
tgtcttagaaaaagagatggaatgtttcagcaatgaaatacttacatggctccaagcctaagtacaac |
33040836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 33025554 - 33025699
Alignment:
| Q |
204 |
cacaatctgaatgacaataaataaataataaaactcataactttagagcaagtttgttgaaattcaacattcactgtcatggatgcaagcttgaagagta |
303 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||| | |||||||||| |||||||||| ||||||| |||||| | ||||| |||||||||| |
|
|
| T |
33025554 |
cacaatcggaatgacaataaataaataa---aatccataaatctagagcaagtaagttgaaattcgacattcatagtcatgaaggcaaggttgaagagta |
33025650 |
T |
|
| Q |
304 |
actcaaagatgaaaaacttgaaaattgatgttcattgtcttagaaaaag |
352 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||| |||||| ||||||| |
|
|
| T |
33025651 |
acttaaagatgaaaaatttgaaaattgatattcactgtctttgaaaaag |
33025699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 33019649 - 33019704
Alignment:
| Q |
351 |
agagatggaatgttggagcaaccgaatacttacatggccccaaacctaagtacaac |
406 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
33019649 |
agagatggaatgtttcagcaatgcaatacttacatggctccaaacctaagtacaac |
33019704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University