View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13620_low_5 (Length: 380)
Name: NF13620_low_5
Description: NF13620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13620_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 6236455 - 6236083
Alignment:
| Q |
1 |
atcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactataatttag |
100 |
Q |
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| T |
6236455 |
atcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaaatttag |
6236356 |
T |
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| Q |
101 |
aaacaccatgatattattgccttgaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgttt |
200 |
Q |
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| T |
6236355 |
aaacaccatgatat-attgccttgaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgttt |
6236257 |
T |
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| Q |
201 |
accttttgtgttatttcttcttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattcta |
300 |
Q |
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| T |
6236256 |
accttttgtgttatttcttgttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattcta |
6236157 |
T |
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| Q |
301 |
cacccaagatataaataaa----tnnnnnnnntagagaaagtgatatgataattgtgatacattgatgatgatg |
370 |
Q |
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| T |
6236156 |
cacccaagatataaaaaaaaattaaaaaaaaatagagaaagtgatatgataattgtgatacattgatgatgatg |
6236083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
185 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
275 |
Q |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 33891841 - 33891908
Alignment:
| Q |
25 |
taactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacacta |
92 |
Q |
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| T |
33891841 |
taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtggggacacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 33952407 - 33952340
Alignment:
| Q |
25 |
taactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacacta |
92 |
Q |
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||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
33952407 |
taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtggggacacta |
33952340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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