View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_high_13 (Length: 238)
Name: NF13621_high_13
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8679747 - 8679967
Alignment:
| Q |
1 |
aatattggaataaagaatgaatttgtaaacacgataatttaaatgaagtgtataattggaagaaaaaccttacaacaaaaatatgttttctattacctca |
100 |
Q |
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| T |
8679747 |
aatattgtaataaagaatgaatttgtaaacacaataatttaaatgaagtgtatcattggaaaaaaaaccttacaacaaaaatatattttctattagctta |
8679846 |
T |
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| Q |
101 |
aagcaactgagttacccaactttaatagaggtttctcaatcatgttttactgaatcgatgtagagaaatgtatgtcagacattattttatttccaccaat |
200 |
Q |
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| T |
8679847 |
aagcagctaagttacccaactttaatagaggtttctcaatcatgttttactgaatcgatgtagagaaatatatgtcagacattattttttttccaccaat |
8679946 |
T |
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| Q |
201 |
tgttgaatcgatgcaatgaat |
221 |
Q |
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| T |
8679947 |
tgttgaatcgatgtaatgaat |
8679967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 7427540 - 7427496
Alignment:
| Q |
23 |
ttgtaaacacgataatttaaatgaagtgtataattggaagaaaaa |
67 |
Q |
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| T |
7427540 |
ttgtaaatatgatattttaaatgaagggtataattggaagaaaaa |
7427496 |
T |
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