View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_high_3 (Length: 482)
Name: NF13621_high_3
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 4264778 - 4265139
Alignment:
| Q |
20 |
acacaaacaaaaccaatttggtgcttaaaattatgttccatcatgttcaatgacaaaatgtcaagcacaaagaagagagaaattcaaggaattatttagg |
119 |
Q |
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| T |
4264778 |
acacaaataaaaccaatttggtgcttaaaattatgttccatcatgttcaatgacaaaatgtcaagcacaaagaagagagaaattcaaggaattatttagg |
4264877 |
T |
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| Q |
120 |
atgctaaatgtaagagaaactaaaaataactatgaataagagaagggtttatgggatggaaagcaaataaagatagagagtcatatttatagtacaaact |
219 |
Q |
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| T |
4264878 |
atactaaatgtaagagaaactaaaaataactatgaataagagaagggtttatgggatggaaagcaaataaagatagagagtcatatttatagtacaaact |
4264977 |
T |
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| Q |
220 |
tgaggtccatttactgaagtaagtaagtagtaaccaattaattctttgttcccttccacttggaactatgaaattagatgaagattggaataatgatgtg |
319 |
Q |
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| T |
4264978 |
tgaggtccatttactgaagtaagtaagtagtaaccaattaattctttgttcccttccacttggaactatgaaattagatgaagattggaataatgatgtg |
4265077 |
T |
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| Q |
320 |
tacatctagtccctatgattggaccacaagggccagggtcattatataatatttgaactagt |
381 |
Q |
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| T |
4265078 |
tacatctagtccctatgattggaccacaagggccagggtcattatataatatttgaactagt |
4265139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 4265172 - 4265242
Alignment:
| Q |
403 |
gggtgcacataaccagtttattattgcagtgggaaatgcctaattttgttttacattgaaacaattttctt |
473 |
Q |
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| T |
4265172 |
gggtgtacataaccagtttattattgcagtgggaaatgcctaattttgttttacattgaaacaattttctt |
4265242 |
T |
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