View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_high_5 (Length: 398)
Name: NF13621_high_5
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 26422735 - 26422904
Alignment:
| Q |
13 |
aatatggcaattctactataggaaacagtctttagaacaacaaattaaaactttaaattgaaagtgtgtctgacacgtgttagtgttgtttgacaatgaa |
112 |
Q |
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| T |
26422735 |
aatatggcaagtctactataggaaacagtctttagaacaacaaattaaaactttaaattgaaagtgtgtctgacacgtgttagtgttgtttgacaatgaa |
26422834 |
T |
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| Q |
113 |
cactaacacgacaatgatgcttgtaaattataatctcatacaatcatttctattttcttaagtcattatt |
182 |
Q |
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| T |
26422835 |
cactaacacgacaatgatgcttgtaagttataatctcatacaatcatttctattttcttaagtcattatt |
26422904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 26422924 - 26423054
Alignment:
| Q |
252 |
cgtattttgtgttcgtgttagtgcttattgttttcatgaacatgtcataacttgttttcatgaattctctctaacagtcacacaattgcttattgtgtac |
351 |
Q |
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| T |
26422924 |
cgtattttgtgttcgtgttagtgcttattgttttcatgaacatgtcataacttgttttcatgaattctctctaacagtcacacaattgcttattgtgtac |
26423023 |
T |
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| Q |
352 |
atactttgatatattaggaaatctcgttatt |
382 |
Q |
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| T |
26423024 |
atactttgatatattaggaaatctcgttatt |
26423054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 29635409 - 29635446
Alignment:
| Q |
290 |
aacatgtcataacttgttttcatgaattctctctaaca |
327 |
Q |
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| T |
29635409 |
aacatgtcataacttgttttcataaattctctcaaaca |
29635446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 382
Target Start/End: Complemental strand, 28039343 - 28039248
Alignment:
| Q |
287 |
atgaacatgtcataacttgttttcatgaattctctctaacagtcacacaattgcttattgtgtacatactttgatatattaggaaatctcgttatt |
382 |
Q |
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| T |
28039343 |
atgaacaagtcataacttgttttcataaattcactcgaacagtcacacaagtgcttattgtgtaaatactttgatatattgggaaatttcgttatt |
28039248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 28040525 - 28040354
Alignment:
| Q |
13 |
aatatggcaattctactataggaaacagtctttagaacaacaaattaaaactttaaattgaaagtgtgtctga--------cacgtgttagtgttgtttg |
104 |
Q |
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| T |
28040525 |
aatatggcaagtctactataggaaacagtctttagaacaacaaa-----actttagactgaaggcgtgtctgagggtctgacacgtgttggtgttgttgg |
28040431 |
T |
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| Q |
105 |
acaatgaacactaacacgacaatgatgcttgtaaattataatctcatacaatcatttctattttcttaagtcattat |
181 |
Q |
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|||||| |||| |||| |||| ||| ||||||| || ||||| |||||||||||||||| |||||||||||||||| |
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| T |
28040430 |
acaatggacaccaacatgacagtgacacttgtaagttgtaatcacatacaatcatttctactttcttaagtcattat |
28040354 |
T |
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