View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_high_7 (Length: 274)
Name: NF13621_high_7
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 230204 - 230451
Alignment:
| Q |
11 |
catcatcaatgtcttatcaactatttggttttccaggaatac---tagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttct |
107 |
Q |
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| T |
230204 |
catcatcaatgtcttatcaactatttggttttccaggaatacaactagattcaaagataaaacaatacattggaagagtgccatttctttaatctcttct |
230303 |
T |
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| Q |
108 |
aatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctccta |
207 |
Q |
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| T |
230304 |
aatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcggatttttctatcatcaagaagttcagagttaatattcactctccta |
230403 |
T |
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| Q |
208 |
gggctcctcagatcaaagaggtcatatggcatcctcctattagtcatt |
255 |
Q |
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| T |
230404 |
gggctcctcagatcaaagaggtcatatggcatcctcctattagtcatt |
230451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 12487951 - 12488079
Alignment:
| Q |
127 |
acaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaaga |
226 |
Q |
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| T |
12487951 |
acaattccaaagcttcatcaaactcatcaatgtcggattttgctatcatcaagaagttcagagttaatattcaccctcctagggctcctcagatcaaaga |
12488050 |
T |
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| Q |
227 |
ggtcatatggcatcctcctattagtcatt |
255 |
Q |
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| T |
12488051 |
ggtcatatggcaccctcctattagtcatt |
12488079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 21851089 - 21851287
Alignment:
| Q |
52 |
ctagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaactc |
151 |
Q |
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|||||||||| |||||| ||| || |||||| || || |||||||| || || ||||| |||| |||||||||||||| ||||||| || || || |
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| T |
21851089 |
ctagattcaaggataaacaaattcactggaagtctgcaatctctttaatttcctcaaatgtgactttgtctggtaacaactctaaagctttttctaattc |
21851188 |
T |
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| Q |
152 |
atcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaagaggtcatatggcatcctcctattag |
250 |
Q |
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| T |
21851189 |
ttctatgactgattttgttatcatcaagaagtttagagtgaacattcatcctccaagagcccctcagatcaaggaggttttgtggcagcctcccattag |
21851287 |
T |
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