View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_low_1 (Length: 505)
Name: NF13621_low_1
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 10486407 - 10485947
Alignment:
| Q |
19 |
aagtgaactttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10486407 |
aagttaactttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgt |
10486308 |
T |
|
| Q |
119 |
gtaatgggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10486307 |
gtaatgggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagca |
10486208 |
T |
|
| Q |
219 |
cgattgtcatagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctagattgtaatgaagctttaaaattaataacatatatg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10486207 |
cgattgtcatagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctagattgcaatgaagctttaaaattaataacatata-- |
10486110 |
T |
|
| Q |
319 |
cattattgtacatatttttcgatttagtgcaaaattactagaatcatgacgattcgctataattttagtaaaagttacagtttgaagtttcaataatatc |
418 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
10486109 |
------tgtacatatttttggatttagtgcaaaattactagaatcatggcgattcgctataattttagtaaaagttacaatttggagtttcaa------- |
10486023 |
T |
|
| Q |
419 |
acagtgtcaatgtaattttaccgaactcattgtcaatcgaaatataacttgaaaatggggtcatcttggtttggctcaccgtat |
502 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10486022 |
--------catgtaattttaccaaactcattgtcaatcgaaatataatttgaaaatggggtcatcttggtttggctcaccgtat |
10485947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 25 - 324
Target Start/End: Complemental strand, 10500841 - 10500543
Alignment:
| Q |
25 |
actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatg |
124 |
Q |
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||||| |||||||||||||||| || ||||| |||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10500841 |
actttttgtaacatgccctattgagtggaataggaggatccgtaaaagctccattagagatttgatcaaagacaatcttgttagctgcctctgtgtaatg |
10500742 |
T |
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| Q |
125 |
ggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattg |
224 |
Q |
| |
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|| |||||||||||||||||||| ||||| |||| || |||||||||| | | ||||||||||||| ||||||||| ||||||| | ||||||| || |
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| T |
10500741 |
agtaccatcccatattattctagttgatggttttttacatgaacccacaacagtgtttgtaccatttatgtttatggttgctccacaaccagcacgaatg |
10500642 |
T |
|
| Q |
225 |
tcatagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctagattgtaatgaagctttaaaattaataacatatatgcattat |
324 |
Q |
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| T |
10500641 |
ttatagttgtactttcctccattgccacaacaagccaccagtggaagttcaaaccctacatgttaatcaagattt-aaattaataacataaatacattat |
10500543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 10503902 - 10503601
Alignment:
| Q |
35 |
acatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcc |
134 |
Q |
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||||||||||||||||| ||| |||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||| |||||| | |||| |||||| |
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| T |
10503902 |
acatgccctatttagagaaataggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcttctgtgaagtgggaaccatcc |
10503803 |
T |
|
| Q |
135 |
catattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattgtcatagttgt |
234 |
Q |
| |
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|| || |||||||||||||| |||| ||||| || ||| |||| ||||||||||||| ||||||||||||||||| | | ||||| | ||||| |
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| T |
10503802 |
caaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatggtttctccacagccaacacgaat------gttgt |
10503709 |
T |
|
| Q |
235 |
actcccctccatagccacaacatgccactagtggaagctcaaaccctagattgtaatgaagcttta-----aaattaataacatatatgcattattgtac |
329 |
Q |
| |
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||| ||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
10503708 |
actttcctccatagccacaacatgccacatgtggaagctcaaatcctacatattaatgaagctttaaaatcaaattaataacatatataaattaatgtac |
10503609 |
T |
|
| Q |
330 |
atattttt |
337 |
Q |
| |
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||| |||| |
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| T |
10503608 |
atagtttt |
10503601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 10509321 - 10509078
Alignment:
| Q |
25 |
actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatg |
124 |
Q |
| |
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||||||| ||||||||||||| ||||| ||| |||||||| ||||| |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
10509321 |
actttctataacatgccctatctagagaaataggaggatcattgaaaactccagtaaggatttgagaaaagacaatctcgttagctgcttctgtgtaatg |
10509222 |
T |
|
| Q |
125 |
ggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattg |
224 |
Q |
| |
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||||||||||| |||||||| |||||| ||||||| ||||| ||| |||| ||||||||||||| ||||||| | ||||||| | | ||| |
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| T |
10509221 |
aacaccatcccatatgattctagttgatggatttttgcatgaacctgcaacaatttttgtaccatttatgtttatggatgctccacaaccaacac----- |
10509127 |
T |
|
| Q |
225 |
tcatagttgtactcccctccatagccacaacatgccactagtggaagctc |
274 |
Q |
| |
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|| ||| ||||| ||||||||||||||||||||||| | ||||||||| |
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|
| T |
10509126 |
-caatgttatactctcctccatagccacaacatgccacaaatggaagctc |
10509078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 10544986 - 10545071
Alignment:
| Q |
51 |
ggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatccca |
136 |
Q |
| |
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|||||||||||||||| |||||| |||||||| ||||||||||||| || || |||||||| || ||||| || |||||||||| |
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| T |
10544986 |
ggaatgggaggatctgagaaagccccagtagaaatttgatcaaagataaatttgttagctgcttcagtgtagtgaattccatccca |
10545071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 10545163 - 10545219
Alignment:
| Q |
228 |
tagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctaga |
284 |
Q |
| |
|
|||||||||||||||||| | |||||||||| || ||||| |||||||||||||| |
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|
| T |
10545163 |
tagttgtactcccctccaaaaccacaacatgtaaccagtggctgctcaaaccctaga |
10545219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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