View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_low_10 (Length: 242)
Name: NF13621_low_10
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 23628217 - 23627999
Alignment:
| Q |
1 |
agggtttgtgattgaaggatgggcaccacagttggtgatactgagtcaccgtgcagtgggatcgttcttgactcattgtggatggaactcggtgttggaa |
100 |
Q |
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| T |
23628217 |
agggtttgtgattgaaggatgggcaccacagttggtgatactgagtcaccgtgcagtgggatcgtttttgactcattgtggatggaactcggtgttggaa |
23628118 |
T |
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| Q |
101 |
gggttggtttgtggtgtggtgatgctgacgtggccgatgggtgcagatcagtatacgaatgcgaagctgttggtggatgagttgggtgttgcggttcgag |
200 |
Q |
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| T |
23628117 |
gggttggtttgtggtgtggtgatgctgacgtggccgatgggtgcagatcagtatacgaatgcgaagctgttggtggatgagttgggtgttgcggttcgag |
23628018 |
T |
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| Q |
201 |
ttggagaagtagatgtgaa |
219 |
Q |
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||||||||| |||| |||| |
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| T |
23628017 |
ttggagaaggagatatgaa |
23627999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 11079869 - 11079906
Alignment:
| Q |
64 |
gttcttgactcattgtggatggaactcggtgttggaag |
101 |
Q |
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| T |
11079869 |
gttcgtgactcattgtggatggaactccgtgttggaag |
11079906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 10968553 - 10968585
Alignment:
| Q |
69 |
tgactcattgtggatggaactcggtgttggaag |
101 |
Q |
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| T |
10968553 |
tgacacattgtggatggaactcggtgttggaag |
10968585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 10982503 - 10982535
Alignment:
| Q |
69 |
tgactcattgtggatggaactcggtgttggaag |
101 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
10982503 |
tgacacattgtggatggaactcggtgttggaag |
10982535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 11019114 - 11019146
Alignment:
| Q |
69 |
tgactcattgtggatggaactcggtgttggaag |
101 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
11019114 |
tgactcattgtggatggaactccgtgttggaag |
11019146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 24462295 - 24462263
Alignment:
| Q |
68 |
ttgactcattgtggatggaactcggtgttggaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
24462295 |
ttgactcattgtggatggaactcagtgttggaa |
24462263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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