View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_low_11 (Length: 239)
Name: NF13621_low_11
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 8679473 - 8679647
Alignment:
| Q |
12 |
catcatcaccgtatctaagactaaccctacatctttatacttgtggtttcctccttcttcaatcactgcttccacgataattactcttccattgtcattt |
111 |
Q |
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| T |
8679473 |
catcatcaccatgtctaacactaaccctacatctttatacttgtggtttcctccttcttcaatcactgcttccacgataattactcttccattgtcattt |
8679572 |
T |
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| Q |
112 |
ggaatagcttccttacatttcttcaatatttggatgcattcttcatccccccaatcatgcaaaatccactgcaag |
186 |
Q |
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| T |
8679573 |
ggaatagcttccttacatttcttcaatatttggatgcattcttcatccccccaatcatgcaaaatccgctgcaag |
8679647 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 37740268 - 37740446
Alignment:
| Q |
12 |
catcatcaccgtatctaagactaaccctacatctttatacttgtggt---ttcct---ccttcttcaatcactgcttccacgataattactcttccattg |
105 |
Q |
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|||||||||| | ||||| | ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
37740268 |
catcatcaccatgtctaacattaaccctacgtctttatacttgttgtgttttccttctccttcttcaatcactgcttccacaataataacttttccattt |
37740367 |
T |
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| Q |
106 |
tcatttggaatagcttccttacatttcttcaatatttggatgcattcttcatccccccaatcatgcaaaatccactgca |
184 |
Q |
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|| |||||||| ||||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37740368 |
tcttttggaattgcttctctacagttctttaagatttggatgcactcttcatccccccaatcatgcaaaacccactgca |
37740446 |
T |
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