View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_low_2 (Length: 491)
Name: NF13621_low_2
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Complemental strand, 33154112 - 33153654
Alignment:
| Q |
16 |
atatatatgctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgca |
115 |
Q |
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| T |
33154112 |
atatatatgctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgca |
33154013 |
T |
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| Q |
116 |
aaattatcttgatctttaatcatatctatgccccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacaaagtg |
215 |
Q |
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| T |
33154012 |
aaattatcttgatctttaatcatatctatgctccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacacagtg |
33153913 |
T |
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| Q |
216 |
tgtatcaaaccagccacatctcccttgtcatgatttgatacgtactaatatactttgtcttcccttaaattgcagccaaaataaataaaagattgcagag |
315 |
Q |
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| T |
33153912 |
tgtatcaaaccagccacatctcccttgtcatgatttgatacgtactaatatactttgtcttcccttaaattgcagccaaaataaataaaagattgcagag |
33153813 |
T |
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| Q |
316 |
acatttttatcattctaattttacatggttttgnnnnnnnnttgacannnnnnnnnnatttgaatgattcacggattgttaggtcatgaggggagtttgg |
415 |
Q |
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| T |
33153812 |
acatttttatcattctaattttacatgtttttgaaaaaaaattga-attttttttttatttgaatgattcacggattgttaggtcatgagaggagtttgg |
33153714 |
T |
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| Q |
416 |
gagattattcacattaggtcaaaagcaaacacacaagtgagttggatatcatattttaat |
475 |
Q |
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| T |
33153713 |
gagattattcacattaggtcaaaagcaaacacacaagtgagttggataccatattttaat |
33153654 |
T |
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