View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13621_low_4 (Length: 457)
Name: NF13621_low_4
Description: NF13621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13621_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 10677268 - 10676854
Alignment:
| Q |
20 |
atcagcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacnnnnnnnncctcttataacatggatgtttatgtgagtag |
119 |
Q |
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| T |
10677268 |
atcagcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacaaaaaaaacctcttataacatggatgtttatgtgagtag |
10677169 |
T |
|
| Q |
120 |
aggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatagcaagaaagaaagaagataacaat |
219 |
Q |
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| T |
10677168 |
aggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatagcaagaaagaaagaagataacaat |
10677069 |
T |
|
| Q |
220 |
cttgatcttctctcaagaacaaaggaaaacaattctgatttgcacaacctagttgctttttccttttatgttctccttggtttcctccaattaaggaacc |
319 |
Q |
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| T |
10677068 |
cttgatcttctctcaagaacaaaagaaaacaattctgatttgcacaacctagttgctttttccttttatgttctccttggtttcctccaattaaggaacc |
10676969 |
T |
|
| Q |
320 |
ctcaaagtcgggctccatttcagattcatcctaagacatcctttctatccattactagctatcttgcctattactttaccctttgggttgggcttaaatt |
419 |
Q |
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| T |
10676968 |
ctcaaagtccggctccatttcagattcatcctaagacatcctttctatccattgctagctatcttgcctattacttgaccctttgggttgggcttaaatt |
10676869 |
T |
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| Q |
420 |
ttctataccctttag |
434 |
Q |
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| T |
10676868 |
ttctataccctttag |
10676854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 10673973 - 10673863
Alignment:
| Q |
100 |
atggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatagcaa |
199 |
Q |
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| T |
10673973 |
atggatgttgatgtgagtagaggaagaccccatttgaggagatcgttacatactcaaattgttttcaatcatatagtattaagtaacgtccaaataacta |
10673874 |
T |
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| Q |
200 |
gaaagaaagaa |
210 |
Q |
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||||| ||||| |
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| T |
10673873 |
gaaagcaagaa |
10673863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 368
Target Start/End: Complemental strand, 10673860 - 10673737
Alignment:
| Q |
245 |
aaaacaattctgatttgcacaacctagttgctttttccttttatgttctccttggtttcctccaattaaggaaccctcaaagtcgggctccatttcagat |
344 |
Q |
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| T |
10673860 |
aaaacaatcttgatttgcacacccttgttagttttgccattcatgttctccctggtttcctccaattaatgagcccttaaaaccccactccatttcaggt |
10673761 |
T |
|
| Q |
345 |
tcatcctaagacatcctttctatc |
368 |
Q |
| |
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|||||||||||| |||||| |||| |
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| T |
10673760 |
tcatcctaagacgtcctttatatc |
10673737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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