View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_high_11 (Length: 346)
Name: NF13622_high_11
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 91 - 337
Target Start/End: Complemental strand, 38606111 - 38605872
Alignment:
| Q |
91 |
aatgccgatttattcctcacatgaatatacatatatgaatatgaatgtgatggaaattaaacagataccctttggtttatagnnnnnnnnnnnnnnnnnn |
190 |
Q |
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| T |
38606111 |
aatgtcgatttattcctcacatgaaaatacatatatgtatatgaatgtgatggaaattaaacagatcacctttggcttata-------aaaaaaatcaaa |
38606019 |
T |
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| Q |
191 |
nnntcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccac |
290 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38606018 |
aaatcacctttggattatagctagggagaagagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccac |
38605919 |
T |
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| Q |
291 |
tttggttgaagaagaaggtcgacctccttgttgattttgatccattg |
337 |
Q |
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| T |
38605918 |
tttggttgaagaagaaggtcgacctccttgttgattttgatccattg |
38605872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 194 - 337
Target Start/End: Complemental strand, 38561594 - 38561451
Alignment:
| Q |
194 |
tcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
293 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38561594 |
tcaccttttgattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
38561495 |
T |
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| Q |
294 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattg |
337 |
Q |
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| T |
38561494 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattg |
38561451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 38580808 - 38580667
Alignment:
| Q |
196 |
acctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
295 |
Q |
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| T |
38580808 |
acctttggattatagctagggagaatagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
38580709 |
T |
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| Q |
296 |
ttgaagaagaaggtcgacctccttgttgattttgatccattg |
337 |
Q |
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| T |
38580708 |
ttgaagaagaaggttgacctccttgttgattatgatccattg |
38580667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 38561768 - 38561618
Alignment:
| Q |
21 |
gtcctagctagccaatacaacaaagagttatgcaacgaatgccgattttannnnnnnngttcaagcaatgaatgccgatttattcctcacatgaatatac |
120 |
Q |
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| T |
38561768 |
gtcctagctagccaatacaacaaagagttatgcaatgaatgccgatttt-ttttttttgttcaagcaatgaatgccgatttattcctcacatgaatatac |
38561670 |
T |
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| Q |
121 |
atatatgaatatgaatgtgatggaaattaaacagataccctttggtttatag |
172 |
Q |
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| T |
38561669 |
atatatgaatatgaatgtgatggaaattaaacagataccctttggtttatag |
38561618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 38622318 - 38622428
Alignment:
| Q |
194 |
tcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
293 |
Q |
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||||||| | |||||||||||| ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||||| ||||| |
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| T |
38622318 |
tcaccttggaattatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgacttt |
38622417 |
T |
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| Q |
294 |
ggttgaagaag |
304 |
Q |
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||||||||||| |
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| T |
38622418 |
ggttgaagaag |
38622428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 30195279 - 30195177
Alignment:
| Q |
196 |
acctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
295 |
Q |
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||||| ||||||||| |||||||||||||||||||||| || ||||||||||||| || ||||| || ||||| ||||| | | ||||||| ||||||| |
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| T |
30195279 |
accttgggattatagttagggagaagagagttgagtttggagtagaggatcttcatctgatttcttctgtttttttcaacgagccttctttcaactttgg |
30195180 |
T |
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| Q |
296 |
ttg |
298 |
Q |
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||| |
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| T |
30195179 |
ttg |
30195177 |
T |
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