View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13622_high_12 (Length: 344)
Name: NF13622_high_12
Description: NF13622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13622_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 31350002 - 31350301
Alignment:
| Q |
24 |
ccctaattttctcaagtgttagtgcgagataaatgttgttacttgagtagaaagaacgtaagatcttaggaaaataattcttcacattctatttaccaaa |
123 |
Q |
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| T |
31350002 |
ccctaattttctcaagtgttagtgtgagataaatgttgttacttgagtagaaggaacgtaagatcttaggaaaataattcttcacattctatttaccaaa |
31350101 |
T |
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| Q |
124 |
gatatttcctcttgtgtttccacttgnnnnnnnnatttattttaacggcaaagagaaattttaattatatggtatgcttgtgtattagtttttggttctt |
223 |
Q |
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| T |
31350102 |
gatatttcctcttgtgtttccacttgttttttttatttattttaacggcaaagagaaatttta----tatggtatgcttgtgtattagtttttggttctt |
31350197 |
T |
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| Q |
224 |
tgggtgggtatccaacattttggttataatgaaacacatgaatttctacaacctttgcttcctcgtaataaataatcctttataacattttggtgataga |
323 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31350198 |
tgggtgggtatctaacattttggttataatgaaacacatgaatttgtacaacctttgcatcctcttaataaataatcctttataacattttggtgataga |
31350297 |
T |
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